1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagacctaaaaaaacacacatttttatataaacgcaacgctatttcatctttttctttattttttattgatgtgaatatgtgctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAGCTGTGGTTGCATACAAAATGAATGATGAAGAAGTAGCTTGAGTTCTGG
species | Zea mays |
transcript | GRMZM2G003096_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAG GTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAEST: gi|89249663|gb|DY621449.1|DY621449
genomic: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAGgtagacctaa ... gctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCA
EST: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAG GTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAEST: gi|16378003|gb|BI992233.1|BI992233
genomic: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAGgtagacctaa ... gctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCA
EST: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAG GTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAEST: gi|211152123|gb|FL081697.1|FL081697
genomic: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAGgtagacctaa ... gctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCA
EST: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAG GTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAEST: gi|211322726|gb|FL462750.1|FL462750
genomic: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAGgtagacctaa ... gctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCA
EST: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAG GTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAEST: gi|211537751|gb|FL446842.1|FL446842
genomic: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAGgtagacctaa ... gctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCA
EST: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAG GTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAEST: gi|76281783|gb|DV021351.1|DV021351
genomic: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAGgtagacctaa ... gctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCA
EST: TCCCAGTTGTTGTCGCCCAAGTGAAGACAGTAGTGGTCCCAGAGGACGAG GTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCA
genomic: TCACAGTTGTTGTCGCACAAGTGAAGACAGTAGTGGTCCCAGAGGACGAGgtagacctaa ... gctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCA
acgctatttcatctttttctttattttttattgatgtgaatatgtgctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAGCTGTGGTTGCATACAAAATGAATGATGAAGAAGTAGCTTGAGTTCTGG
tattgat putative branch site (score: 27)
ctatttc putative PPT
atttcatctttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagacctaaaaaaacacacatttttatataaacgcaacgctatttcatctttttctttattttttattgatgtgaatatgtgctatttcagGTTCAGGGTGGCGACACAGAAGAACAAAAGGGGAATGAGCAGGGCGCTGCAGCTGTGGTTGCATACAAAATGAATGATGAAGAAGTAGCTTGAGTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT