1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagacttgaatgaaacaatatacaaattatctattttgtaccaattctaaccagtgatgctctcctcttcttcaacgacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG
species | Zea mays |
transcript | GRMZM2G003096_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|89249663|gb|DY621449.1|DY621449
genomic: GGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: AGTTATTTGTAAAG GGCAAGTAATGTTTTCTATATCCCCTCAAGAACATTATTTTTGACTGCCCAEST: gi|211439719|gb|FL188857.1|FL188857
genomic: AGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTA-TTTTGACTGCCCA
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|60352390|gb|DN219363.1|DN219363
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|211439722|gb|FL188860.1|FL188860
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATEST: gi|211439720|gb|FL188858.1|FL188858
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTGGRG GGCAAGTAATGTTCTCTATATCCCCATCAAGAACATTATTTTGACTGCCCAEST: gi|211537751|gb|FL446842.1|FL446842
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCC-TCAAGAACATTATTTTGACTGCCCA
EST: TAAAAATGGCAAATGTGGGAGATTGGTGGG-TGAAAGTTATTCGTAAAAG GGCAAGTAATGTTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCEST: gi|211439718|gb|FL188856.1|FL188856
genomic: TAAAAATTGCAAGTGTGGGAGATT-GTGGGTTGAAAGTTATTCGT-AAAGgtagacttga ... gacatactagGGCAAGTAATG-TTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCC
EST: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG GGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
genomic: TCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAGgtagacttga ... gacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCAT
tattttgtaccaattctaaccagtgatgctctcctcttcttcaacgacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG
ttctaac putative branch site (score: 1)
aattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagacttgaatgaaacaatatacaaattatctattttgtaccaattctaaccagtgatgctctcctcttcttcaacgacatactagGGCAAGTAATGTTCTCTATATCCCCTCAAGAACATTATTTTGACTGCCCATACCAGATAAGCTCAGAGGCAGAGGGTCAAACATATAAGGATGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG