1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catatttggaattggtgggggtcattcacagcaatgttttggcaatgcattacagtattagcagtttatacatagcatgacttctgtacatttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGGAGATCAAATAGGCACCTTAGTTGACCAGTCAGGAAGGATCACATAAAA
species | Zea mays |
transcript | GRMZM2G002978_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTG TCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGEST: gi|149075947|gb|EE164512.2|EE164512
genomic: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTGgttagtacct ... tttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTG
EST: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTG TCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGEST: gi|76289316|gb|DV028884.1|DV028884
genomic: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTGgttagtacct ... tttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTG
EST: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTG TCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGEST: gi|74235766|gb|DT643680.1|DT643680
genomic: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTGgttagtacct ... tttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTG
EST: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTG TCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGEST: gi|88753733|gb|DY537874.1|DY537874
genomic: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTGgttagtacct ... tttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTG
EST: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTG TCGTCTTCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGEST: gi|60338150|gb|DN205123.1|DN205123
genomic: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTGgttagtacct ... tttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTG
EST: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTG TCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGEST: gi|60349804|gb|DN216777.1|DN216777
genomic: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTGgttagtacct ... tttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTG
EST: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTG TCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTG
genomic: CAAAATGGACATGACAGCAGTAACATGTTGTGAGGAGAACAACATTCCTGgttagtacct ... tttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTG
tgcattacagtattagcagtttatacatagcatgacttctgtacatttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGGAGATCAAATAGGCACCTTAGTTGACCAGTCAGGAAGGATCACATAAAA
catttctt CT-rich tract
tttatacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatttggaattggtgggggtcattcacagcaatgttttggcaatgcattacagtattagcagtttatacatagcatgacttctgtacatttcttgcagTCGTCATCTTTAACATGTTGGAGCCTGGTAACATCTCAAGAGCAATTTGTGGAGATCAAATAGGCACCTTAGTTGACCAGTCAGGAAGGATCACATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - tggtggg
- - - - - - - - - - - cattcac
- - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcatga