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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattatttgtctagttgggtgatttgggccacttgactttttgtttgtttgtcttgaagttgtctattgtgtctcataacatttgtggacttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG

Basic information

species Zea mays
transcript GRMZM2G002859_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71307047|gb|DR789678.1|DR789678
EST:     CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTG                         GTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
genomic: CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTGgtacattatt ... ttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
EST: gi|149070323|gb|EE158722.2|EE158722
EST:     CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTG                         GTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
genomic: CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTGgtacattatt ... ttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
EST: gi|33091909|gb|CF051903.1|CF051903
EST:     AAAGATTGACCTTGCAGCGTCTTATTGCATTG                         GTTGAATCAGAGAGAAATTACCACCAAAAGGTCCTACAAATTCTTGATCAA
genomic: AAAGATTGACCTTGCAGCGTCTTATTGCATTGgtacattatt ... ttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
EST: gi|148986436|gb|EE030178.2|EE030178
EST:     CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTG                         GTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
genomic: CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTGgtacattatt ... ttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
EST: gi|40335185|gb|CK369255.1|CK369255
EST:     CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTG                         GTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
genomic: CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTGgtacattatt ... ttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
EST: gi|60356623|gb|DN223596.1|DN223596
EST:     CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTG                         GTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
genomic: CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTGgtacattatt ... ttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
EST: gi|37380473|gb|CF627052.1|CF627052
EST:     TTGACCTTGCAGCGTCTTATTGCATTG                         G-TGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
genomic: TTGACCTTGCAGCGTCTTATTGCATTGgtacattatt ... ttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
EST: gi|21987351|gb|BQ778879.1|BQ778879
EST:     CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTG                         GTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA
genomic: CCGTTGAGGCCCAACAGCAAAGATTGACCTTGCAGCGTCTTATTGCATTGgtacattatt ... ttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgtcttgaagttgtctattgtgtctcataacatttgtggacttaattgaagGTTGAATCAGAGAGAAACTACCACCAAAAGGTCCTACAAATTCTTGATCAACTTGAGAGAGAG
                              ataacattt  TA-rich tract