1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacagtacaggtccaagtttttccagatgcctgtccgtcgttgtccgagaggatcgcagaatcattcctcacaccagctgctgtttcagGGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGAGCAAGCAGGGAGATGAGGCAGAGCACGACCTGAGTGACAGAGGACTCTGCC
species | Zea mays |
transcript | GRMZM2G002627_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG GGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGAGCEST: gi|74240292|gb|DT648206.1|DT648206
genomic: CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAGgtacagtaca ... gctgtttcagGGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGAGC
EST: CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG GGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGGGCEST: gi|60394705|gb|DN227575.1|DN227575
genomic: CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAGgtacagtaca ... gctgtttcagGGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGAGC
EST: CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAG GGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGAGC
genomic: CTACTCAGCGAGCCGTACACGAACTCGAGCAGGAGCAAGgtacagtaca ... gctgtttcagGGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGAGC
ccgtcgttgtccgagaggatcgcagaatcattcctcacaccagctgctgtttcagGGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGAGCAAGCAGGGAGATGAGGCAGAGCACGACCTGAGTGACAGAGGACTCTGCC
tcctcac putative branch site (score: 5)
ctgtttc putative PPT
aatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtacaggtccaagtttttccagatgcctgtccgtcgttgtccgagaggatcgcagaatcattcctcacaccagctgctgtttcagGGTAATAACCACTTCCCATGGGGAGATCATCGTGCTGCTGCAGAGACGAGCAAGCAGGGAGATGAGGCAGAGCACGACCTGAGTGACAGAGGACTCTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA