1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttcggtagcatttgcgaacgttttgttattgcttgcatagttgcatggcgctacagtttcgccgtactattaatctcctacattactctaaaattcagACCGAGAGGCGATTGGCCCAGAACAGAGAAGCTGCGAGGAAGAGCAGGCTGAGAAAAAAG
species | Zea mays |
transcript | GRMZM2G000842_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGCATGGATCCACAAGGAAAGACGGCAGGCTGTTAGACNGC-AAG ACCGAGAGGCGATTGGCCCAGAACEST: gi|76015224|gb|DT942394.1|DT942394
genomic: GGAAAGCATGGATCCACAAGGAAAGACGGCAGGCTGTTAGAC-GCCAAGgttcggtagc ... taaaattcagACCGAGAGGCGATTGGCCCAGAAC
EST: GGAAAGCATGGATCCACAAGGAAAGACGGCAGGCTGTTAGACGCCAAG ACCGAGAGGCGATTGGCCCEST: gi|71439738|gb|DR820788.1|DR820788
genomic: GGAAAGCATGGATCCACAAGGAAAGACGGCAGGCTGTTAGACGCCAAGgttcggtagc ... taaaattcagACCGAGAGGCGATTGGCCC
EST: GGAAAGCATGGATCCACAAGGAAAGACGGCAGGCTGTTAGACGCCAAG ACCGAGAGGCGATTGGCCCAGAACAGAGAAGCTGCGAGGAAGAGCAGGCTG
genomic: GGAAAGCATGGATCCACAAGGAAAGACGGCAGGCTGTTAGACGCCAAGgttcggtagc ... taaaattcagACCGAGAGGCGATTGGCCCAGAACAGAGAAGCTGCGAGGAAGAGCAGGCTG
catggcgctacagtttcgccgtactattaatctcctacattactctaaaattcagACCGAGAGGCGATTGGCCCAGAACAGAGAAGCTGCGAGGAAGAGCAGGCTGAGAAAAAAG
ttactct CT-rich tract
attactctaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcggtagcatttgcgaacgttttgttattgcttgcatagttgcatggcgctacagtttcgccgtactattaatctcctacattactctaaaattcagACCGAGAGGCGATTGGCCCAGAACAGAGAAGCTGCGAGGAAGAGCAGGCTGAGAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG