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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggttttttggtttgtcgctggccagtatacgtgcgcattatgagattactgtgccttattacatgataatgttgacgggatgtagGAGGTGCTGCTTCCAGGTGGCCATGGCCTCATGGTTCGTGGGTATCGTCCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAA

Basic information

species Zea mays
transcript GRMZM2G000052_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000052_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 3'ss of exon 8
------------------gtatgggtttt--ttggtttgtcgctggccagtatacgtgcgcatta-tgagattactgtgccttattacatgataatgttgacgggatgtagGAGGTGCTGCTTCCAGGTGGCCATGGCCTCATGGTTCGTGGGTATCGTCCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAA
                   |||  | |    |||         ||  ||  ||     |    || |  |||| || || || ||      |   || ||   || || ||||||| |||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||||||| |||||||||||||   ||| | 
gtaggactttggttcctgatatcagctacaattgccaatattttgctcatgatgtactcatgctagtttgattgctatgtctcatgttcgtactgtgctgt--gggtgcagGAGGTACTGCTTCCTGGTGGCCATGGTCTCATGGTTCGTGGATATCGTCCAGTAATAAATACTCTGGCAAAAGGCCTAGATATACGCCTTGGCCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71764900|gb|DR962837.1|DR962837
EST:     GTTGGTTTGCCACCGACGCTGATTCAATTTCACTACAGGGTTGGGATCAG                         GAGGTGCTGCTTCCAGGTGGCCATGGCCTCATGGTTCGTGGGTATCGTCCG
genomic: GTTGGTTTGCCACCGACGCTGATTCAATTTCACTACAGGGTTGGGATCAGgtatgggttt ... cgggatgtagGAGGTGCTGCTTCCAGGTGGCCATGGCCTCATGGTTCGTGGGTATCGTCCG
EST: gi|60356234|gb|DN223207.1|DN223207
EST:     GTTGGTTTGCCACCGACGCCGATTCAATTTCACTACAGGGTTGGGATCAG                         GAGGTGCTGCTTCCAGGTGGCCATGGCCTAATGGTTCGTGGGTATCGTCCG
genomic: GTTGGTTTGCCACCGACGCTGATTCAATTTCACTACAGGGTTGGGATCAGgtatgggttt ... cgggatgtagGAGGTGCTGCTTCCAGGTGGCCATGGCCTCATGGTTCGTGGGTATCGTCCG
EST: gi|211514296|gb|FL420360.1|FL420360
EST:     TTGGTTTGCCACCGACGCCGATTNCA-TTTCACTACAGGGTTGGGATCAN                         GAAGTGCTGCTTCCAGGTGGCCATGGCC
genomic: TTGGTTTGCCACCGACGCTGATT-CAATTTCACTACAGGGTTGGGATCAGgtatgggttt ... cgggatgtagGAGGTGCTGCTTCCAGGTGGCCATGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcgcattatgagattactgtgccttattacatgataatgttgacgggatgtagGAGGTGCTGCTTCCAGGTGGCCATGGCCTCATGGTTCGTGGGTATCGTCCGGTTATAAATACTCTCGCAAAAGGCTTAGATATACGCCTCAACCATAA
                                       tgttgac  putative branch site (score: 3)
                         ttattacatgataat  TA-rich tract