1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtaacgatatttcttttctttcttatataatcaatttttctggataataagatatttttgcatttccatcttcatcttctaactctgatataatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGACCAAAGGAATGTTTATGATTACCTCAAAGGCATGGTGACTTGCCACAGGG
species | Zea mays |
transcript | AC235544.1_FGT004 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAG TTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGACEST: gi|71770990|gb|DR968927.1|DR968927
genomic: CACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAGgtattctgaa ... taatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGAC
EST: CACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAG TTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAAEST: gi|71312838|gb|DR792945.1|DR792945
genomic: CACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAGgtattctgaa ... taatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAA
EST: CACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAG TTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGAC
genomic: CACATCTGCGTCGAATTGGAGTTTTCAGTGAGTCAGAATTGCGCTTACAGgtattctgaa ... taatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGAC
aataagatatttttgcatttccatcttcatcttctaactctgatataatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGACCAAAGGAATGTTTATGATTACCTCAAAGGCATGGTGACTTGCCACAGGG
tttct CT-rich tract
atatttttgcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgatatttcttttctttcttatataatcaatttttctggataataagatatttttgcatttccatcttcatcttctaactctgatataatttctagTTCCTGAGGTGCAGGGAAGCTTGGCTTTCTGGAATTCTTGAAGATCTGGACCAAAGGAATGTTTATGATTACCTCAAAGGCATGGTGACTTGCCACAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca