1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaacatccccatcccctcctggtgtattacaacacctcgagacgtttgcatgtgggcatgcttgaatgtgctaacagatgtagctgcatgtacactgtagGTCACATGGGTTGAGCATGCAGAATATCCTGAGGCGTCCGTGCACCAGCTCTACCAGCCTCTTATGCGCTCTGGCCTCGCCCTTGGCGCAGGGCGGTGGC
species | Zea mays |
transcript | AC235534.1_FGT007 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
ttgcatgtgggcatgcttgaatgtgctaacagatgtagctgcatgtacactgtagGTCACATGGGTTGAGCATGCAGAATATCCTGAGGCGTCCGTGCACCAGCTCTACCAGCCTCTTATGCGCTCTGGCCTCGCCCTTGGCGCAGGGCGGTGGC
tgctaac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacatccccatcccctcctggtgtattacaacacctcgagacgtttgcatgtgggcatgcttgaatgtgctaacagatgtagctgcatgtacactgtagGTCACATGGGTTGAGCATGCAGAATATCCTGAGGCGTCCGTGCACCAGCTCTACCAGCCTCTTATGCGCTCTGGCCTCGCCCTTGGCGCAGGGCGGTGGC
aaacatc
- - - - ccatccc
- - - - - - - - -cctggtg
- - - - - - - - - - - - - - -caacacc
- - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcat