1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtgactgcacaacgatttttgatttttgaagtgttctacttttgttgtgtactgaaacatgagcttatgaattgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCATGAACTATTGCAGCCGTACCCTGTACTTCATGAGAAGCCAG
species | Zea mays |
transcript | AC233895.1_FGT001 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTTCAGTGAGATCAGCCAGAAGGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|31351014|gb|CD435371.1|CD435371
genomic: TTTTCAGTGAGATCAGCCAGAAG-TTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|14569289|gb|BI097612.1|BI097612
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|32850813|gb|CD990494.1|CD990494
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|84980121|gb|DW530470.1|DW530470
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|8665685|gb|BE186501.1|BE186501
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|32931969|gb|CF036781.1|CF036781
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: TTTTCAGTGAGATCAGCCAGAAGGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|33097827|gb|CF057787.1|CF057787
genomic: TTTTCAGTGAGATCAGCCAGAAG-TTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|32838111|gb|CD977789.1|CD977789
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: TTTTCAGTGAGATCAGCCAGAAGTTAAACAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|32838243|gb|CD977921.1|CD977921
genomic: TTTTCAGTGAGATCAGCCAGAAGTTCC-CAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTAACAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|32850802|gb|CD990483.1|CD990483
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|166427588|gb|EG314516.1|EG314516
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAAEST: gi|33092800|gb|CF052794.1|CF052794
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAA
EST: TTTTCAGTGAGATCAGCCAGAAGGTTCCCAAACATGCCTTTTACTACTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCAEST: gi|15208836|gb|BI430720.1|BI430720
genomic: TTTTCAGTGAGATCAGCCAGAAG-TTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
EST: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAG GGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
genomic: ATTTTCAGTGAGATCAGCCAGAAGTTCCCAATCATGCCTTTTACTGCTAGgtttgtgact ... attgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCA
ttgaagtgttctacttttgttgtgtactgaaacatgagcttatgaattgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCATGAACTATTGCAGCCGTACCCTGTACTTCATGAGAAGCCAG
ttatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgactgcacaacgatttttgatttttgaagtgttctacttttgttgtgtactgaaacatgagcttatgaattgctatagGGCATTAGAAGAGAAGCGTGCGCGTTTAGGCTTGGTGGAATGCATGAACCATGAACTATTGCAGCCGTACCCTGTACTTCATGAGAAGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC