1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attaagtacaaaaggaaacatgtcagtctagttgatacacaacagtataagtttcttagtggtgtagctagtttagtaaagatgaaaatcgtcaaactagTTGTGGAATGGTGGTATTGTTTACAGTACATGTGTTTGGACTTTGGACACTGGGTTCCAATTACATTATGAG
species | Zea mays |
transcript | AC216869.3_FGT001 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
tataagtttcttagtggtgtagctagtttagtaaagatgaaaatcgtcaaactagTTGTGGAATGGTGGTATTGTTTACAGTACATGTGTTTGGACTTTGGACACTGGGTTCCAATTACATTATGAG
tttagtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaagtacaaaaggaaacatgtcagtctagttgatacacaacagtataagtttcttagtggtgtagctagtttagtaaagatgaaaatcgtcaaactagTTGTGGAATGGTGGTATTGTTTACAGTACATGTGTTTGGACTTTGGACACTGGGTTCCAATTACATTATGAG
- - - tacaaaa
- - - - - - - - - catgtca
- - - - - - - - - - - - - - - - - - -cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaaa