1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttgatccaacatagtattaacaagagttgccatgttcatcttggtttgtatttactctcagcaacattagtttctaagacattcgttcattttacccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG
species | Zea mays |
transcript | AC211349.4_FGT001 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGATATTCGACTCTTCTGGTCGAATGATAAACGGTTCACGTCCCAG TTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAGEST: gi|22819700|gb|BU499790.1|BU499790
genomic: TTCCAGATATTCGACTCTTCTGGTCGAATGATAAACGGTTCACGTCCCAGgtactgctgc ... ttttacccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG
EST: TTCCAGATATTCGACTCTTCTGGTCGAATGATAAACGGTTCACGTCCCAG TTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG
genomic: TTCCAGATATTCGACTCTTCTGGTCGAATGATAAACGGTTCACGTCCCAGgtactgctgc ... ttttacccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG
tttgtatttactctcagcaacattagtttctaagacattcgttcattttacccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG
ttcatttt CT-rich tract
ttcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgatccaacatagtattaacaagagttgccatgttcatcttggtttgtatttactctcagcaacattagtttctaagacattcgttcattttacccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -caacata
- - - - - - - - - -aacaaga
- - - - - - - - - - - - - - -gccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaca