1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gcatcttctatttcctttgaaaacctttgtccagaaacagaatgcaccatgttgactcctttgtgcattgctaactgatctctggttgctaaatatgcagGTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCTGCACCCAAAGAAGACGACATAATCCACAAACACTTACCCCTGAAAGTAT
species | Zea mays |
transcript | AC208327.4_FGT003 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAG GTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCTEST: gi|32866681|gb|CF006363.1|CF006363
genomic: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAGgtgattcagt ... aaatatgcagGTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCT
EST: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAG GTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCTEST: gi|211517252|gb|FL335507.1|FL335507
genomic: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAGgtgattcagt ... aaatatgcagGTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCT
EST: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAG GTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCTEST: gi|31349324|gb|CD433681.1|CD433681
genomic: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAGgtgattcagt ... aaatatgcagGTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCT
EST: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAG GTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCTEST: gi|31350283|gb|CD434640.1|CD434640
genomic: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAGgtgattcagt ... aaatatgcagGTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCT
EST: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAG GTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCT
genomic: CTCAAAAACCACATATAAGTGCTACGTGGGGAGATACTGGTCATGTTCAGgtgattcagt ... aaatatgcagGTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCT
accatgttgactcctttgtgcattgctaactgatctctggttgctaaatatgcagGTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCTGCACCCAAAGAAGACGACATAATCCACAAACACTTACCCCTGAAAGTAT
taaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcttctatttcctttgaaaacctttgtccagaaacagaatgcaccatgttgactcctttgtgcattgctaactgatctctggttgctaaatatgcagGTGTGGGACTTGAGCTCATTCCTTAATTCTTTAGCTGAGTCAGGGACAGCTGCACCCAAAGAAGACGACATAATCCACAAACACTTACCCCTGAAAGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - -cagaaaca
- - - - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc