1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttcagtacttgtcataattgttccttgaaatgtaatccgtcctgtcatgaatttaaccatgtcgtttgatctaccactctagttatacttgcattgcagGTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCGTACGTATGCGCTTCTTCTGAACGTTTCTGCGCTGTTGCCAATGTGCTAG
species | Zea mays |
transcript | AC191251.3_FGT005 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAG GTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCGEST: gi|148981581|gb|EE027738.2|EE027738
genomic: TTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAGgtatttacca ... tgcattgcagGTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCG
EST: TTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAG GTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCGEST: gi|71757155|gb|DR955092.1|DR955092
genomic: TTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAGgtatttacca ... tgcattgcagGTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCG
EST: TTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAG GTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCG
genomic: TTCCTTTGTGTCTGCGTGCTATTGAGATGGGCAGTGAACTTTCAAAAAAGgtatttacca ... tgcattgcagGTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCG
tcatgaatttaaccatgtcgtttgatctaccactctagttatacttgcattgcagGTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCGTACGTATGCGCTTCTTCTGAACGTTTCTGCGCTGTTGCCAATGTGCTAG
aatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcagtacttgtcataattgttccttgaaatgtaatccgtcctgtcatgaatttaaccatgtcgtttgatctaccactctagttatacttgcattgcagGTGGCCACTTTTATTCTCCAAAAGATTATGCTTGACGACACAGGGCTTGCGTACGTATGCGCTTCTTCTGAACGTTTCTGCGCTGTTGCCAATGTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -gtacttg
- - - - - - - - - -tgttcct
- - - - - - - - - - - - - tgaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaccac