1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taatccatttaggcaccttcatagctataaggtgtttgtttctaaactttgctggagccatgttacaaggcaatatgacttctctgtatgtgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG
species | Zea mays |
transcript | GRMZM5G896731_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAEST: gi|78109136|gb|DV527553.1|DV527553
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
EST: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAEST: gi|88756830|gb|DY540971.1|DY540971
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
EST: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATEST: gi|86468848|gb|DY235218.1|DY235218
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCAT
EST: CTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAEST: gi|71438321|gb|DR819371.1|DR819371
genomic: CTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
EST: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAEST: gi|76293027|gb|DV032595.1|DV032595
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
EST: TCGGCCCACTTGCTGTCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAEST: gi|89250808|gb|DY622594.1|DY622594
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
EST: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAEST: gi|78109135|gb|DV527552.1|DV527552
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
EST: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAEST: gi|60358732|gb|DN225705.1|DN225705
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
EST: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAEST: gi|91050003|gb|EB160421.1|EB160421
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
EST: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTG GCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
genomic: TCGGCCCACTTGCTGCCTATTATAAACTGCCACTTAATCGTGTCCTAGTGgtaggtgttt ... tgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAA
actttgctggagccatgttacaaggcaatatgacttctctgtatgtgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG
aatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatccatttaggcaccttcatagctataaggtgtttgtttctaaactttgctggagccatgttacaaggcaatatgacttctctgtatgtgagtttcagGCGTTTGATGACATGGACTTGCCATGTGGAGTTCTCCGTCTACAGCCAAAAGGAGGTTCTGGACGACACAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG