1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctgttctacaatctgagtttcttttagcttataatgtctactccttttctcttgagttttgagtgcatggaaccttatatttttccttctgccatgtagATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACCAGAAGTCCTCAAAGAGGGGTACTAAAGACACCAATCAGGGATCTGTTAA
species | Zea mays |
transcript | GRMZM5G895188_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTTTTTAATGAGCTTTACTTTCTGGTAGCTGGGGGGACTGTTTGGACAG ATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACCEST: gi|76287664|gb|DV027232.1|DV027232
genomic: TCTTTTTAATGAGCTTTACTTTCTGGTAGCTGGGGGGACTGTTTGGACAGgtacgctgta ... tgccatgtagATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACC
EST: TCTTTTTAATGAGCTTTACTTTCTGGTAGCTGGGGGGACTGTTTGGACAG ATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACCEST: gi|211405990|gb|FL414505.1|FL414505
genomic: TCTTTTTAATGAGCTTTACTTTCTGGTAGCTGGGGGGACTGTTTGGACAGgtacgctgta ... tgccatgtagATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACC
EST: TCTTTTTAATGAGCTTTACTTTCTGGTAGCTGGGGGGACTGTTTGGACAG ATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACC
genomic: TCTTTTTAATGAGCTTTACTTTCTGGTAGCTGGGGGGACTGTTTGGACAGgtacgctgta ... tgccatgtagATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACC
ttttctcttgagttttgagtgcatggaaccttatatttttccttctgccatgtagATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACCAGAAGTCCTCAAAGAGGGGTACTAAAGACACCAATCAGGGATCTGTTAA
ccttatatttttcctt CT-rich tract
aaccttatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgttctacaatctgagtttcttttagcttataatgtctactccttttctcttgagttttgagtgcatggaaccttatatttttccttctgccatgtagATGGTCAACCCCCAGCAATCGATGAGAAAAAGAGTCCTGGTTTTAATCACCAGAAGTCCTCAAAGAGGGGTACTAAAGACACCAATCAGGGATCTGTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - ctactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgg