Sequence
atgc intronic sequence ATGC exonic sequencegtagctttcttctgccccaggaaatggttctcttcttatatcgcgctcttggcaatttggcttgctttatggaaggttttttttcattttagTTGCAACGGAAGTCTTCAGTTGGGGAAGTGGGACAAATTATCAGCTGGGAACTGGCAACGTCCACATACAAAAACTACCATGCAAAGTAGAAGCTTTGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G893355_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g07080.1 (Oryza sativa), 3'ss of exon 4
gtagctttcttctgccccaggaaa---tggttctct-tcttatatcgcgctcttg--------gcaatttggc----------------ttgctttatggaaggtt-------ttttttcattttagTTGCAACGGAAGTCTTCAGTTGGGGAAGTGGGACAAATTATCAGCTGGGAACTGGCAACGTCCACATACAAAAACTACCATGCAAAGTAGAAGCTTTGCA
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gtagttattttctgcttcagtaaacagtggtttcctattttgttcagtgcttttgtgctgatgacattctgaccatatttcttcaggctttgcttaataaaatatttcttaccttttccccttttagTTGCAATGGAAGTCTTCAGTTGGGGAAGTGGGACAAATTATCAGCTGGGAACAGGCAATGCCCACATACAAAAACTACCATGCAAAGTAGATGCCTTGCA
upper sequence: GRMZM5G893355_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA19G29100.1 (Glycine max), 3'ss of exon 2
gtagctttcttctgccccaggaaatggttctcttcttatatcgcgctcttggcaatttggcttgct--ttatggaaggttttttttcattttagTTGCAACGGAAGTCTTCAGTTGGGGAAGTGGGACAAATTATCAGCTGGGAACTGGCAACGTCCACATACAAAAACTACCATGCAAAGTAGAAGCTTTGCA
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gta-taaatttctgtacttggaatgctttggattgttgtcaccagtacaaagtgattatataggatgacaatttgactcttggttcatctttagTGGCCACTGAGGTCTTTAGTTGGGGCAGTGGTACAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTACCATGTAAAGTTGATTCACTCGG
upper sequence: GRMZM5G893355_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 3'ss of exon 4
gtagctttcttctgccccaggaaatggttctcttcttatatcgcgctcttggcaattt---ggcttgctttatggaaggttttttttcattttagTTGCAACGGAAGTCTTCAGTTGGGGAAGTGGGACAAATTATCAGCTGGGAACTGGCAACGTCCACATACAAAAACTACCATGCAAAGTAGAAGCTTTGCA
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gtggttat----tgcacttgtcaat--ttattgaatcatgtgg--ttgttggaaatctttagggataacctgagtgacttttcatgtctgtttagTTGCCACGGAGTTATTTAGTTGGGGAAGTGGTGTGAACTATCAACTTGGAACTGGGAACACTCACATACAAAAGCTACCATGCAAAGTTGATTCACTTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatcgcgctcttggcaatttggcttgctttatggaaggttttttttcattttagTTGCAACGGAAGTCTTCAGTTGGGGAAGTGGGACAAATTATCAGCTGGGAACTGGCAACGTCCACATACAAAAACTACCATGCAAAGTAGAAGCTTTGCA
ttttttttcatttt CT-rich tract
ttttttttcatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagctttcttctgccccaggaaatggttctcttcttatatcgcgctcttggcaatttggcttgctttatggaaggttttttttcattttagTTGCAACGGAAGTCTTCAGTTGGGGAAGTGGGACAAATTATCAGCTGGGAACTGGCAACGTCCACATACAAAAACTACCATGCAAAGTAGAAGCTTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC