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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actttgcttgacttgacatttgttaatgcaaatcagaaccaacaagttaattgggtctggttttaccatctatggcccctgtgatcttttcctcctacagGTTCCAAAGCTATTACTTCATCGGCTTTTTCCCAATGCGCGATATTCAATTTGGATTGATGGGAAACTTAAGCTAGTGAGGGATCCTTATCAGGTATTAG

Basic information

species Zea mays
transcript GRMZM5G891056_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G891056_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g19870.1 (Oryza sativa), 3'ss of exon 5
---actttgcttgacttgacatttgttaatgcaaatcagaaccaacaagttaattgggtctggttttaccatctatggcccctgtgatcttttcctcctacagGTTCCAAAGCTATTACTTCATCGGCTTTTTCCCAATGCGCGATATTCAATTTGGATTGATGGGAAACTTAAGCTAGTGAGGGATCCTTATCAGGTATTAG
     | ||||     | |       | |||| |  |  ||      |||  ||| | |    ||| | ||| |||| ||  || |||| | || ||  ||||||||||||  || |||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
atagttatgctacttgtaaaggcaaatgatgctatgcttaat--gtgagtggatttgttaatttttaatcatatatgacct-tgcgatcatctcatcaaacagGTTCCAAAATTACTACTTCATCGTCTATTTCCTAATGTGCGGTATTCAATTTGGATTGATGGGAAACTTAAACTAGTGAGGGATCCTTATCAGCTATTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaattgggtctggttttaccatctatggcccctgtgatcttttcctcctacagGTTCCAAAGCTATTACTTCATCGGCTTTTTCCCAATGCGCGATATTCAATTTGGATTGATGGGAAACTTAAGCTAGTGAGGGATCCTTATCAGGTATTAG
 agttaat  putative branch site (score: 4)
                              cccctgtgatcttttc  putative PPT
                                      atctttt  TA-rich tract