1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgctatacattcacttatctaattgctggactgatacctggcgaatgatctgacacataaagtacctttgtcagGTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCATTGTGGCTCATATGCAACAAGCGAGCAG
species | Zea mays |
transcript | GRMZM5G890843_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAACCACTGGATTGTATCTCACTTTCAAGTTGACATCAGTCGTGGAAAAG GTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCATEST: gi|211069208|gb|FL305338.1|FL305338
genomic: TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCAGTCGTGGAAAAGgtgctataca ... cctttgtcagGTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCAT
EST: TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCAGTCGTAGAAAAG GTTCAATCATTTTTGACGGCACTGAGAGCGTTATCTCATAAAGACTTCCATEST: gi|166529385|gb|EG045172.1|EG045172
genomic: TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCAGTCGTGGAAAAGgtgctataca ... cctttgtcagGTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCAT
EST: CTTTCAAGTTGACATCAGTCGTGGAAAAG GTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCATEST: gi|211069207|gb|FL305337.1|FL305337
genomic: CTTTCAAGTTGACATCAGTCGTGGAAAAGgtgctataca ... cctttgtcagGTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCAT
EST: CAAGTTGACATCAGTCGTAGAAAAG GTTCAATCATTTTTGACGGCACTGAGAGCGTTATCTCATAAAGACTTCCATEST: gi|211188890|gb|FL010921.1|FL010921
genomic: CAAGTTGACATCAGTCGTGGAAAAGgtgctataca ... cctttgtcagGTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCAT
EST: TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCAGTCGTAGAAAAG GTTCAATCATTTTTGACGEST: gi|211188888|gb|FL010919.1|FL010919
genomic: TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCAGTCGTGGAAAAGgtgctataca ... cctttgtcagGTTCAATCATTTTTGACG
EST: TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCAGTCGTAGAAAAG GTTCAATCATTTTTGACGGCACTGAGAGCGTTATCTCATAAAGACTTCCAT
genomic: TAACCACTGGCTTGTATCTCACTTTCAAGTTGACATCAGTCGTGGAAAAGgtgctataca ... cctttgtcagGTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCAT
taattgctggactgatacctggcgaatgatctgacacataaagtacctttgtcagGTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCATTGTGGCTCATATGCAACAAGCGAGCAG
atctgac putative branch site (score: 77)
cctttgtc putative PPT
ataaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctatacattcacttatctaattgctggactgatacctggcgaatgatctgacacataaagtacctttgtcagGTTCAATCATTTTTGACGGCATTGAGAGCGTTATCTCATAAAGACTTCCATTGTGGCTCATATGCAACAAGCGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG