1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aactgataagatccaacatattttaataggacgtctatgtggccttcaatggtagaatgataccaagggatgtgatggagctctgttccttttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGATGTCTCACTGAAAAACAACGAGATGGCAATGAGAAGTGTTCAGGAAGA
species | Zea mays |
transcript | GRMZM5G884316_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGEST: gi|148971069|gb|EE021910.2|EE021910
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGEST: gi|76021371|gb|DT948541.1|DT948541
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGEST: gi|78120001|gb|DV538385.1|DV538385
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGEST: gi|86471421|gb|DY237791.1|DY237791
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGEST: gi|71431443|gb|DR812493.1|DR812493
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGEST: gi|89250255|gb|DY622041.1|DY622041
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGEST: gi|76918441|gb|DV167296.1|DV167296
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGEST: gi|88749926|gb|DY534067.1|DY534067
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
EST: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAG GGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
genomic: AGTGGTACTGATGATTCTATCCATGTTCAAATCATCAAGATAGTCATCAGgtttcacaga ... tttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATG
tcaatggtagaatgataccaagggatgtgatggagctctgttccttttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGATGTCTCACTGAAAAACAACGAGATGGCAATGAGAAGTGTTCAGGAAGA
ttttaat putative branch site (score: 10)
ctctgttcctttt CT-rich tract
ttttaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgataagatccaacatattttaataggacgtctatgtggccttcaatggtagaatgataccaagggatgtgatggagctctgttccttttaatgtagGGTTATTGCCCACGGAAGCTTAAATACTTGGTGCTGAACTGCTGAAGTATGATGTCTCACTGAAAAACAACGAGATGGCAATGAGAAGTGTTCAGGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA