1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtagtgtcaaactgaataaagtgggcactgaatctttggctagtgtgtaaataattaattgaactaaactgcttccatctttttttggcttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGATGGGAATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCA
species | Zea mays |
transcript | GRMZM5G876003_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|31354696|gb|CD439053.1|CD439053
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|60395258|gb|DN228127.1|DN228127
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|78093364|gb|DV521738.1|DV521738
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|78074349|gb|DV502783.1|DV502783
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|71429033|gb|DR810083.1|DR810083
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|78074350|gb|DV502784.1|DV502784
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCCATATTTTGTCTTTCTTTGEST: gi|148948105|gb|EC893614.2|EC893614
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|76922748|gb|DV169154.1|DV169154
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGNAGCCATCCTCTATEST: gi|74240434|gb|DT648348.1|DT648348
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTAT
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|74245743|gb|DT653657.1|DT653657
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|148948106|gb|EC893615.2|EC893615
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCCGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|74235314|gb|DT643228.1|DT643228
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|149071083|gb|EE159484.2|EE159484
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGGCTTTCTTTGEST: gi|91055947|gb|EB166365.1|EB166365
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|149100899|gb|EE186995.2|EE186995
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|78093365|gb|DV521739.1|DV521739
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|78080458|gb|DV508870.1|DV508870
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGEST: gi|76923219|gb|DV169381.1|DV169381
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
EST: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCAT ACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
genomic: TTGATCTCGTTTCAGATGAACCTTCAGTGATTGCTTGTGATATGGCTCATgtaagcactc ... ttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTG
gtgtaaataattaattgaactaaactgcttccatctttttttggcttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGATGGGAATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCA
aactaaa putative branch site (score: 2)
tctttttttggctt putative PPT
aataattaattgaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtagtgtcaaactgaataaagtgggcactgaatctttggctagtgtgtaaataattaattgaactaaactgcttccatctttttttggcttatctgcagACTCCATTGGAGCCATCCTCTATAGATGTTGCAATATTTTGTCTTTCTTTGATGGGAATCAACTATCCAAGTTATTTAGAGGAAGCAAATAGGGTTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA