Sequence
atgc intronic sequence ATGC exonic sequence...aatcagtatttcagttgaaaaaaataaatattgctgtttcatgacctcagtagaaactatagctggagttcatgttatgatgctgtatttgttgcgatagGTTAGTCATCATCCAATGGTCATGGCTTGTCATTGTGAAGGAAAAGGGTGGAAATTTTGGGGAGACAGCAATGTAAAGAGCAAGTTCTGGGGGCAAACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G875564_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 3'ss of exon 4
aatcagtatttcagttgaaa---aaaataaatattgctgtttcatgacctcag-tagaaactatagctggagttcatgttatgatgctgtatttgttgcgatagGTTAGTCATCATCCAATGGTCATGGCTTGTCATTGTGAAGGAAAAGGGTGGAAATTTTGGGGAGACAGCAATGTAAAGAGCAAGTTCTGGGGGCAAACAA
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--ctcttctatcaattaagtcctgaattccttagcaagatttatttttctctgatcattgtcatttcatcaccccctttttttgtgttg--tttattgaaacagGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGGAAATTCTGGGCTGACAGTAACCTACGAACAAAATTTTGGGGACGATCAA
upper sequence: GRMZM5G875564_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 6
aatcagtatttcagttgaaa---aaaataaatattgctgtttcatgacctcagtagaaactatagctggagttcatgttatgatgctgtatttgttgcgatagGTTAGTCATCATCCAATGGTCATGGCTTGTCATTGTGAAGGAAAAGGGTGGAAATTTTGGGGAGACAGCAATGTAAAGAGCAAGTTCTGGGGGCAAACAA
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--ctcttctatcaattaagtcctgaattccttagcaagatttatttttctctg-agcattgtcatttcatcaccccctttttttgtgttgtttattgaaacagGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGGAAATTCTGGGCTGACAGTAACCTACGAACAAAATTTTGGGGACGATCAA
upper sequence: GRMZM5G875564_T01 (Zea mays), 3'ss of exon 5
lower sequence: PP1S67_260V6.1 (Physcomitrella patens), 3'ss of exon 5
aatcagtatttcagttgaaaaaaataaatattgctgtttcatgacctcagtagaaactatagctgg--agttcatgttatgatgctgtatttgttgcgat--agGTTAGTCATCATCCAATGGTCATGGCTTGTCATTGTGAAGGAAAAGGGTGGAAATTTTGGGGAGACAGCAATGTAAAGAGCAAGTTCTGGGGGCAAACAA
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---ggagatattaatttgcaacc-tctttgtcatatctttcgagctttagattaagtaaaagttaatcatcttgcatcttctatctccctacgttgctttgcagGTGAGTCATCATCCAATGATTGTGGCATGTCATTGCGAGGGCAGAGGCTGGAAATTCTGGGGTGACAGCAATTTGAAAAGCAAGTTTTGGGGTCGTTCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60338569|gb|DN205542.1|DN205542EST: ACTTGGAGTATTCTTATTTGTTGGATCGTGCATATGAATGTGGCCTAAAG GTTAGTCATCATCCAATGGTCATGGCTTGTCATTGTGAAGGAAAAGGGTGG
genomic: ACTTGGAGTATTCTTATTTGTTGGATCGTGCATATGAATGTGGCCTAAAGgtatttttct ... gttgcgatagGTTAGTCATCATCCAATGGTCATGGCTTGTCATTGTGAAGGAAAAGGGTGG
EST:
gi|16137371|gb|BI894236.1|BI894236EST: ACTTGGAGTATTCTTATTTGTTGGATCGTGCATATGAATGTGGCCTAAAG GTTAGTCATCATC
genomic: ACTTGGAGTATTCTTATTTGTTGGATCGTGCATATGAATGTGGCCTAAAGgtatttttct ... gttgcgatagGTTAGTCATCATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcagtagaaactatagctggagttcatgttatgatgctgtatttgttgcgatagGTTAGTCATCATCCAATGGTCATGGCTTGTCATTGTGAAGGAAAAGGGTGGAAATTTTGGGGAGACAGCAATGTAAAGAGCAAGTTCTGGGGGCAAACAA
aaactata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatcagtatttcagttgaaaaaaataaatattgctgtttcatgacctcagtagaaactatagctggagttcatgttatgatgctgtatttgttgcgatagGTTAGTCATCATCCAATGGTCATGGCTTGTCATTGTGAAGGAAAAGGGTGGAAATTTTGGGGAGACAGCAATGTAAAGAGCAAGTTCTGGGGGCAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG