1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactattatacatgcttttttgtgattcatcaagtatatcgtggaaggttttcaattaagccgaatatcctttacaaatttgtgacagTGGAATAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAGGTTGAACCTCTGTTCATCAGCAAG
species | Zea mays |
transcript | GRMZM5G874840_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTTGTGGGTGGTGCTTTCTACAAGCGGGCTTCTAGTCTGGGATGGAAG TGGAATAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAGEST: gi|67023082|gb|CO451831.1|CO451831
genomic: TCCTTGTGGGTGGTGCTTTCTACAAGCGGGCTTCTAGTCTGGGATGGAAGgtactattat ... tttgtgacagTGGAATAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAG
EST: TCCTTGTGGGTGGTGCTTTCTACAAGCGGGCTTCTAGTCTGGGATGGAAG TGGAACAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAGEST: gi|14191346|gb|BG833576.1|BG833576
genomic: TCCTTGTGGGTGGTGCTTTCTACAAGCGGGCTTCTAGTCTGGGATGGAAGgtactattat ... tttgtgacagTGGAATAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAG
EST: TCCTTGTGGGTGGTGCTTTCTACAAGCGGGCTTCTAGTCTGGGATGGAAG TGGAATAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAG
genomic: TCCTTGTGGGTGGTGCTTTCTACAAGCGGGCTTCTAGTCTGGGATGGAAGgtactattat ... tttgtgacagTGGAATAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAG
gtatatcgtggaaggttttcaattaagccgaatatcctttacaaatttgtgacagTGGAATAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAGGTTGAACCTCTGTTCATCAGCAAG
ttttcaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactattatacatgcttttttgtgattcatcaagtatatcgtggaaggttttcaattaagccgaatatcctttacaaatttgtgacagTGGAATAGTTGGTCAGAATTTGTTAACCTAGATGTTATTCATCGTGAAAAGGTTGAACCTCTGTTCATCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG