1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaatcttggcagtccatcctcctcctgtgaatttgctgaggggcactgatggctcatgtggttcttgtggttcagGTGTAAACTCTTCGGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCGGTGCGAACTTTGTGCTAGCAGCCATGGAGAAACTTGGTCTGAACGACCC
species | Zea mays |
transcript | GRMZM5G873519_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGTATTACTCTGGCGCTGGCTTTGAGCATAGTGTCTTTCTTTGAAG GTGTAAACTCTTCGGTAACTGCTGTEST: gi|211249853|gb|FL405315.1|FL405315
genomic: AAGGTGTATTACTCTGGCGCTGGCTTTGAGCATAGTGTCTTTCTTTGAAGgtaaaatctt ... tgtggttcagGTGTAAACTCTTCGGTAACTGCTGT
EST: AAGGTGTATTACTCTGGCGCTGGCTTTGAGCATAGTGTCTTTCTTTGAAG GTGTAAACTCTTCGGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCGEST: gi|74234748|gb|DT642662.1|DT642662
genomic: AAGGTGTATTACTCTGGCGCTGGCTTTGAGCATAGTGTCTTTCTTTGAAGgtaaaatctt ... tgtggttcagGTGTAAACTCTTCGGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCG
EST: AAGGTGTATTACTCTGGCGCTGGCTTTGAGCATAGTGTCTTTCTTTGAAG GTGTAAACTCTTCGGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCGEST: gi|32844015|gb|CD983696.1|CD983696
genomic: AAGGTGTATTACTCTGGCGCTGGCTTTGAGCATAGTGTCTTTCTTTGAAGgtaaaatctt ... tgtggttcagGTGTAAACTCTTCGGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCG
EST: AAGGTGTATTACTCTGGCGCTGGCTTTGAGCATAGTGTCTTTCTTTGAAG GTGTAAACTCTTCAGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCG
genomic: AAGGTGTATTACTCTGGCGCTGGCTTTGAGCATAGTGTCTTTCTTTGAAGgtaaaatctt ... tgtggttcagGTGTAAACTCTTCGGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCG
cctcctgtgaatttgctgaggggcactgatggctcatgtggttcttgtggttcagGTGTAAACTCTTCGGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCGGTGCGAACTTTGTGCTAGCAGCCATGGAGAAACTTGGTCTGAACGACCC
cactgat putative branch site (score: 56)
ttcttgt putative PPT
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatcttggcagtccatcctcctcctgtgaatttgctgaggggcactgatggctcatgtggttcttgtggttcagGTGTAAACTCTTCGGTAACTGCTGTCGTGGTTGTCCTTACCGGGCTCATCGGTGCGAACTTTGTGCTAGCAGCCATGGAGAAACTTGGTCTGAACGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA