1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttaagatattgtaacaatcttgatgtcatatcagttctatagcatttacgagtagcagcgcaatctgatatcttctcttttgttgttttgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAGATTCCAAGGCATCACAGAAGAAGGAAATAGAAGAG
species | Zea mays |
transcript | GRMZM5G872373_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAGEST: gi|148954539|gb|EC899976.2|EC899976
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
EST: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAGEST: gi|8368636|gb|BE051581.1|BE051581
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
EST: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAGEST: gi|74234157|gb|DT642071.1|DT642071
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
EST: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAGEST: gi|91867347|gb|EB399652.1|EB399652
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
EST: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
atttacgagtagcagcgcaatctgatatcttctcttttgttgttttgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAGATTCCAAGGCATCACAGAAGAAGGAAATAGAAGAG
atctgat putative branch site (score: 4)
tatcttctcttttgtt CT-rich tract
atatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttaagatattgtaacaatcttgatgtcatatcagttctatagcatttacgagtagcagcgcaatctgatatcttctcttttgttgttttgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAGATTCCAAGGCATCACAGAAGAAGGAAATAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - -ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtagcag