1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cctagtccagaaagatttgtatccatcctttgttttctacccagattcaaacattgcttttgtttctctcagttgcactgatattttacttttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAGAGCCAACATCACGATTTTGGCTG
species | Zea mays |
transcript | GRMZM5G871861_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAG GCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTCTGCTAACTGAAGEST: gi|149004383|gb|EE039059.2|EE039059
genomic: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAGgtatgtatgc ... tttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAG
EST: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAG GCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAGEST: gi|13557642|gb|BG548998.1|BG548998
genomic: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAGgtatgtatgc ... tttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAG
EST: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAG GCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAGEST: gi|78113561|gb|DV531952.1|DV531952
genomic: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAGgtatgtatgc ... tttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAG
EST: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAG GCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAGEST: gi|71449411|gb|DR830461.1|DR830461
genomic: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAGgtatgtatgc ... tttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAG
EST: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCTTAG GCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAGEST: gi|149001459|gb|EE038760.2|EE038760
genomic: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAGgtatgtatgc ... tttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAG
EST: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAG GCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAG
genomic: TTATATATGCTGTAGCTCAACAGCCACCTTATGATGGCCTAGgtatgtatgc ... tttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAG
ttcaaacattgcttttgtttctctcagttgcactgatattttacttttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAGAGCCAACATCACGATTTTGGCTG
cactgat putative branch site (score: 3)
ttttacttttc CT-rich tract
tgatattttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctagtccagaaagatttgtatccatcctttgttttctacccagattcaaacattgcttttgtttctctcagttgcactgatattttacttttcacgcagGCCATTCAAATCACTTGACCCCATTGCAACTTGAAAGTTTGCTAACTGAAGAGCCAACATCACGATTTTGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - -cagaaaga
- - - - - - - - - - - ccatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcac