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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccttcatttattttttattttaatataataagttaataacactgatttttctactttatggttttaagcttgtttattattttgatttggttttgctttttgtacagATGTTCAGTGAACTCAGAGCGCACATATTAGCATCACAG

Basic information

species Zea mays
transcript GRMZM5G869993_T03
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093809|gb|CF053803.1|CF053803
EST:     AGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAG                         ATGTTCAGTGAACTCAGAGCGCACATATTAGCATCACAG
genomic: AGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAGgtgccttcat ... ttttgtacagATGTTCAGTGAACTCAGAGCGCACATATTAGCATCACAG
EST: gi|33092039|gb|CF052033.1|CF052033
EST:     AGTGGAGTCTGAGTCGACCAATACTGAGCCTGGTAATGACCAGTGAACAG                         ATGTTCAGTGAACTCAGAGCGCACATATTAGCATCACAG
genomic: AGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAGgtgccttcat ... ttttgtacagATGTTCAGTGAACTCAGAGCGCACATATTAGCATCACAG
EST: gi|166624899|gb|EG158833.1|EG158833
EST:     AGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAG                         ATGTTCAGTGAACTCAGAGCGCACATAT
genomic: AGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAGgtgccttcat ... ttttgtacagATGTTCAGTGAACTCAGAGCGCACATAT
EST: gi|32836639|gb|CD976317.1|CD976317
EST:     AGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAG                         ATGTTCAGTGAACTCAGAGCGCACATATTAGCATCACAG
genomic: AGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAGgtgccttcat ... ttttgtacagATGTTCAGTGAACTCAGAGCGCACATATTAGCATCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttatggttttaagcttgtttattattttgatttggttttgctttttgtacagATGTTCAGTGAACTCAGAGCGCACATATTAGCATCACAG
                           ttttgat  putative branch site (score: 4)
                                      ttttgcttttt  putative PPT
         ttttaagcttgtttat  TA-rich tract