1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagggccccccttttctggagtcttttttaagcacatcccaagagttagagaattgcatgacgaatggaacttgtttgtttggtgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAATG
species | Zea mays |
transcript | GRMZM5G869572_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCATGGTGCAAGGCGTTGTGCAT GATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAATEST: gi|31363389|gb|CD447746.1|CD447746
genomic: AAGCATGGTGCAAGGCGTTGTGCATgtaagggccc ... tgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAAT
EST: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCAT GATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAATEST: gi|89250982|gb|DY622768.1|DY622768
genomic: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCATgtaagggccc ... tgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAAT
EST: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCAT GATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAATEST: gi|6918339|gb|AW399869.1|AW399869
genomic: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCATgtaagggccc ... tgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAAT
EST: CCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCAT GATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGACTGTGTGCAATEST: gi|211163359|gb|FK967902.1|FK967902
genomic: CCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCATgtaagggccc ... tgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAAT
EST: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCAT GATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAATEST: gi|6918594|gb|AW400124.1|AW400124
genomic: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCATgtaagggccc ... tgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAAT
EST: CCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCAT GATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGACTGTGTGCAATEST: gi|60338787|gb|DN205760.1|DN205760
genomic: CCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCATgtaagggccc ... tgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAAT
EST: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCAT GATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAAT
genomic: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAAGGCGTTGTGCATgtaagggccc ... tgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAAT
ccaagagttagagaattgcatgacgaatggaacttgtttgtttggtgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAATG
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggccccccttttctggagtcttttttaagcacatcccaagagttagagaattgcatgacgaatggaacttgtttgtttggtgtgatccagGATCAGAGATGATTTTGAGAAAGAGGACTCGTTTCATGGATTGTGTGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA