Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaacattgctacaataggagagtctggaggtagttactgcatctttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG

Basic information

species Zea mays
transcript GRMZM5G868433_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 5
aaaacattgctacaataggagag-tctggaggtagttac-tgcatctttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
      |       |    | || | | ||| | ||||  | | |  ||  ||      | |  | |  |   | |  |   | ||  | |    || | |||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||    |||||| ||||||| |||
gggttctcatagtgactttatagcttttgagcttgttagatacttggttatttttaatgttctacctggctgaatcaagt--accttctctggtgtgatcagGTACCCAAACCTGAAGAGTGTCAGGGAATTGATCTACAAGAGGGGTTACGGAAAGCTCAACAAGCAGAGGATTCCTCTTCAGAACAACAAAGTCATTGAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 3'ss of exon 4
aaaacattgctacaatag--gagagtctggaggtagttactgcatctttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgt---ttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
  |   |   |  ||| |   || ||||| |  |||||   ||  |  |  |   |         |  | ||   ||| ||| | |  |   |||| |   |||||||||| || |||||||||||| | || |||||||||||||||||||| ||||| || |||||||| || ||||||||  | |||||| |||||||||||
--attttaatttgaattgtctagggtctgaaa-tagttcaagc--ccctaatgactagagttgattattgatcttcttactagattagtgattcttatgttttagGTACCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA09G06860.1 (Glycine max), 3'ss of exon 5
aaaacattgctacaataggagagtctggaggtagttactgcatctttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
             ||   || |||     |  | | | ||     | | |   |  || ||      || |   |    | | |   | |||   || |||||||| || ||||||||||| |  || |||||||||||||||||||| |||||| | ||||||||||| ||  |  |   | |||||    |  | || 
-----------gtaa-gtgaaagttcaacgacattgattgtcatatggttcattacctgca-----ccacgggttcttaatatttgcaaatccacttcagGTACCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAA

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA15G18170.2 (Glycine max), 3'ss of exon 5
aaaacattgctacaataggagagtctggaggtagttactgcatctttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
               || | ||   |  |  ||  |      || | | |   |  || ||      ||||    |   | | |   | |||   || |||||||| || ||||||||||| || || |||||||||||||||||||| |||||| | ||||||||||| ||  || || |  |||||    | || || 
--------------gtaagtgaaagttcaactacattgattctcatggttcattacctgca-----ccatggttct-taatatttgcaaatccacttcagGTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAA

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 5
aaaacattgctacaataggagagtctggaggtagttactgcatctttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
   |  |   |||| |   |   ||   |     ||| |       |    | | ||   ||  |   |     |  ||   ||  | | | ||  | || | ||| |||||||||||||||| ||| |||||||||||||| || |||||||| || ||| | ||||||||  || || || |||||    |  | |||
-gtatgtatatacactctca---tcctaaaccctttaatctgatgctatgagataacaagagtcttgaagagtgtgacttttctcttctgtttt--tcagATTCCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 3'ss of exon 4
-aaaacattgctacaataggagagtctggaggtagt-tactgcatctttgcttg-gtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
  ||  ||    ||  |  |    |||  |  |  | ||     |||   ||||  |         || | |||   ||    |  | | ||||    ||||||||||| || |||||||||||  | || ||||| ||||||||||| ||||||||  ||||||||||||| |   |  || |  |||||    |  | || 
gtaagtatc-tcactctttgtttttcttaaaatcctataaaaagtctaaacttgtatagtattcatttgtaatgtatttat--atttcaaatat----tttagGTACCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTACGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAA

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0054g00210.t01 (Vitis vinifera), 3'ss of exon 5
---aaaacattgctacaataggagagtctggaggtagttactgcatctttgcttg-gtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
   |  |  || ||    |       |    |     | |     |||   |||| ||         |||| |||   ||      |  ||||      ||||||||||| || |||||||||||  | ||  |||| |||||||||||||| |||||  ||||||||||||| |   |  || |  |||||    |  | || 
gtaagtatcttactcttttgtttttcttaaaatcctataaaaagttctgaacttgtgtattattcatttctaatgtatttatattgcaaatat------tttagGTACCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAA

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 3'ss of exon 3
-----aaaacattgctacaataggagagtctggaggtagttactgcatctttgcttggtgact-ccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
     |  |  || ||    |       |   ||     | |     |||   ||||   | |      |||| |||   ||      |  ||||      ||||||||||| || |||||||||||  | ||  |||| |||||||||||||| |||||  ||||||||||||| |   |  || |  |||||    |  | || 
gggtaagtatcttactcttttgtttttcttaagatcctataaaaagttctgaacttgtatattattcatttctaatgtatttatattgcaaatat------tttagGTACCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAA

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 5
aaaacattgctacaataggagagtctggaggtagttactgcatctttgcttggtgactccagcttctcatg-accttgctaaactgatat---atcttgttt-agGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
                    | ||   ||  |    ||| |||      |  | ||    | || | |||| |   || ||  |  |||    |  |||||| ||||| || || || ||||||||||||||  |||| ||||||||||| || |||||||| ||||||||||| |   ||||| || | |||  | |||| || 
----------------gtatgtgttctgac-tgccaacttcataacc-ttcagggatcatatctccacatgcaatctgttattcatatactgaagattgtttcagGTATCCCAATTTAAAGAGTGTCAGGGAACTGATTTACAAGAGGGGTTATGGAAAACTTAACAAGCAGAGAACTGCTCTGACTGATAACTCAATCATTGAA

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0054g00060.t01 (Vitis vinifera), 3'ss of exon 4
-aaaacattgctacaataggagagtctggaggtagt-tactgcatctttgcttg-gtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
  ||  ||  |  |  |  |    |||  |  |  | ||     |||   ||||  |         |||| |||   ||      |  ||||      ||||||||||| || |||||||||||  | || ||||| ||||||||||| ||| ||||  ||||||||| ||| |   |  || |  |||||    |  | || 
gtaagtatctcacccttttgtttttcttaaaatcctataaaaagtctaaacttgtatagtattcatttctaatgtatttatattgcaaatat------tttagGTACCCCAATTTGAAGAGTGTGTGAGAATTGATTTACAAGAGGGGGTACAGAAAGTTGAACAAGCTGAGAACTGCCTTGACCGACAACTCCATTGTGGAA

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 4
-aaaacattgctacaataggagagtctggaggtagt-tactgcatctttgcttggtgact-ccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
  ||  ||  |     |  |    |||  |  |  | ||     |||   ||||   | |      |||| |||   ||      |  ||||      ||||||||||| || |||||||||||  | || ||||| ||||||||||| || |||||  ||||||||||||| |   |  || |  |||||    |  | || 
gtaagtatctcactcttttgtttttcttaaaatcctataaaaagtctaaacttgtatattattcatttctaatgtatttatattgcaaatat------tttagGTACCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAA

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S11_173V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------aaaacattgctacaa-----taggagagtctggaggtagttactgcatctttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
                  ||  | |  || ||     | || |  |  | || |  ||   ||| |  |   || |   |  |  || |||     ||  ||   ||||    ||||   ||  |||||||||||||||||||| ||||||||||||||||| | || ||||||||  | ||||||  | | | | ||||  |  |||||    ||||||| 
gtaattaaactctggagcaattaataatataagcgtttcggtgcctacgaagatgtttttcgcacccctatgtgttagtttaaatttttcacatgttt--taccatgattgtacttgc--agCAACCCGAACTTGAAGAGTGTCCGGGAGTTGATCTACAAGCGTGGGTACGGAAATGTAAACAAGTCGCGCACCGCTCTTACGGACAACACCATCATCGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4753534|gb|AI657444.1|AI657444
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|15632349|gb|BI679442.1|BI679442
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|14701065|gb|BI233483.1|BI233483
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|4646950|gb|AI622025.1|AI622025
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|32932701|gb|CF037513.1|CF037513
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGGGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|24764818|gb|CA399980.1|CA399980
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|60358037|gb|DN225010.1|DN225010
EST:     GTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: GTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|211171434|gb|FK956282.1|FK956282
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACC-GAACTTGAAGAGTTGTCAGGGAGTTGATCT
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGT-GTCAGGGAGTTGATCT
EST: gi|5915128|gb|AW052769.1|AW052769
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|211318387|gb|FL341244.1|FL341244
EST:     AARGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAARAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|76922808|gb|DV169184.1|DV169184
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|33104385|gb|CF064345.1|CF064345
EST:     TAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: TAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|15554187|gb|BI644185.1|BI644185
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|9733002|gb|BE511754.1|BE511754
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|60350172|gb|DN217145.1|DN217145
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|5846778|gb|AI999861.1|AI999861
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|15590144|gb|BI674760.1|BI674760
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|148940442|gb|EC885240.2|EC885240
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|94477419|gb|EB706377.1|EB706377
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGGGTCAGGGAGTTGATCTTCAAGAAGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|211192857|gb|FL432748.1|FL432748
EST:     AAGGCTACCATTMACAT-STTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|148941047|gb|EC885904.2|EC885904
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|5922428|gb|AW055717.1|AW055717
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|5915120|gb|AW052761.1|AW052761
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|9733001|gb|BE511753.1|BE511753
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|31405831|gb|CD484563.1|CD484563
EST:     CATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: CATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|78025749|gb|DV494136.1|DV494136
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|20299953|gb|BQ162896.1|BQ162896
EST:     AAAGCAACCATTAACATGCTTCGCAGGGTTGAACCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|76922806|gb|DV169183.1|DV169183
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|60338800|gb|DN205773.1|DN205773
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|60355671|gb|DN222644.1|DN222644
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|166483736|gb|EG189505.1|EG189505
EST:     AACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAAACTTAGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTAC
genomic: AACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCG-AACTT-GAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTAC
EST: gi|148935172|gb|EC879210.2|EC879210
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|71438751|gb|DR819801.1|DR819801
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|60344948|gb|DN211921.1|DN211921
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|21987690|gb|BQ779218.1|BQ779218
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|71444618|gb|DR825668.1|DR825668
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|15313112|gb|BI478567.1|BI478567
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|31350410|gb|CD434767.1|CD434767
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|32936880|gb|CF041699.1|CF041699
EST:     AAGGCGACTATTAACATGCTACGCAGGGTTGAGCCATATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|60340627|gb|DN207600.1|DN207600
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|78084905|gb|DV513298.1|DV513298
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|32917266|gb|CF022078.1|CF022078
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTA-CCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACG
EST: gi|60357671|gb|DN224644.1|DN224644
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|5296239|gb|AI782919.1|AI782919
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|6021537|gb|AW066465.1|AW066465
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|32866949|gb|CF006631.1|CF006631
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
EST: gi|15313739|gb|BI478933.1|BI478933
EST:     AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG                         GTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG
genomic: AAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGGgtaatttctc ... tcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG
                                             tcttgttt  CT-rich tract
                                        atatatcttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaacattgctacaataggagagtctggaggtagttactgcatctttgcttggtgactccagcttctcatgaccttgctaaactgatatatcttgtttagGTACCCGAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTACGGAAAACTGAACAAGCAGAGGATCCCTCTGTCTAACAACCAAGTCATCGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT