1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agctttagctctttccttctgttggtgcacatgcatgctttatgtatatttgtttaattagttaatagttacaacgtacattcattctctaccatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTGAAGGTCATACATTTCGATAAGGAAACAAAAGAGTATGTGTCTACTTTAT
species | Zea mays |
transcript | GRMZM5G862959_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAG GTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTGEST: gi|29944945|gb|CB815389.1|CB815389
genomic: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAGgttcaacttc ... accatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTG
EST: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAG GTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTGEST: gi|31358058|gb|CD442415.1|CD442415
genomic: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAGgttcaacttc ... accatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTG
EST: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAG GTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGEST: gi|211487166|gb|FL254349.1|FL254349
genomic: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAGgttcaacttc ... accatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAG
EST: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAG GTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTGEST: gi|28873324|gb|CB329328.1|CB329328
genomic: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAGgttcaacttc ... accatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTG
EST: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAG GTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTGEST: gi|93012241|gb|EB637761.1|EB637761
genomic: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAGgttcaacttc ... accatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTG
EST: CATCTATGACGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAG GTTGCTGCTAGGGTAAAATCACATGACGAAAAAGATGAGTGGTTTGCCGCG
genomic: CATCTATGAGGAATCAACTTGACCAAGCTGCAAGCCTTAAAGGAGAGCAGgttcaacttc ... accatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTG
atatttgtttaattagttaatagttacaacgtacattcattctctaccatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTGAAGGTCATACATTTCGATAAGGAAACAAAAGAGTATGTGTCTACTTTAT
agttaat putative branch site (score: 4)
ttctctaccatttc putative PPT
tttaattagttaatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctttagctctttccttctgttggtgcacatgcatgctttatgtatatttgtttaattagttaatagttacaacgtacattcattctctaccatttcagGTTGCTGCTAGGGTAAAATCAGATGACGAAAAAGATGAGTGGTTTGTCGTGAAGGTCATACATTTCGATAAGGAAACAAAAGAGTATGTGTCTACTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA