1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtggcagtttattttcatcaatattggttccttttttggttttgtcatttcaaatgtacacttcctgttgccttaacttctcttcctgactattctgcagTCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCAAAGAGTCCAATCATTGCTTCAGCCTGGCTTACAGTTGCTGTTGGATTGA
species | Zea mays |
transcript | GRMZM5G856598_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACATTACTTTAACACGGAAGATAATGCAG TCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCAEST: gi|7145129|gb|AW506610.1|AW506610
genomic: GACATTACTTTAACACGGAAGATAATGCAGgtgtgttgct ... tattctgcagTCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCA
EST: TGCTTATTAGAAATGGTACAGACATTACTTTAACACGGAAGATAATGCAG TCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCAEST: gi|32921298|gb|CF026110.1|CF026110
genomic: TGCTTATTAGAAATGGTACAGACATTACTTTAACACGGAAGATAATGCAGgtgtgttgct ... tattctgcagTCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCA
EST: TACAGACATTACTTTAACACGGAAGATAATGCAG TCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCA
genomic: TACAGACATTACTTTAACACGGAAGATAATGCAGgtgtgttgct ... tattctgcagTCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCA
catttcaaatgtacacttcctgttgccttaacttctcttcctgactattctgcagTCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCAAAGAGTCCAATCATTGCTTCAGCCTGGCTTACAGTTGCTGTTGGATTGA
tcctgac putative branch site (score: 62)
cttctcttcctgact CT-rich tract
aaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggcagtttattttcatcaatattggttccttttttggttttgtcatttcaaatgtacacttcctgttgccttaacttctcttcctgactattctgcagTCAATTGGCTTTCTGGGGCCAGGTATTGCTTTGCTCTGTCTGAATGCAGCAAAGAGTCCAATCATTGCTTCAGCCTGGCTTACAGTTGCTGTTGGATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT