1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctaattgtcaatttctctctatacttttctacagaaacttttctgattgcatatttttgtttatcataacttcctgtcacttcaatttccttttactagGTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAA
species | Zea mays |
transcript | GRMZM5G855347_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAG GTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGCTTGGEST: gi|211434929|gb|FK975633.1|FK975633
genomic: TGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAGgtaactttct ... cttttactagGTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGG
EST: TGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAG GTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGGEST: gi|71435893|gb|DR816943.1|DR816943
genomic: TGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAGgtaactttct ... cttttactagGTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGG
EST: TGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAG GTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGGEST: gi|74245969|gb|DT653883.1|DT653883
genomic: TGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAGgtaactttct ... cttttactagGTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGG
EST: TGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAG GTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGG
genomic: TGCACTTGGATTAGCTACACCTACAGCTATCTTAATAGGAACTTCCCTAGgtaactttct ... cttttactagGTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGG
gattgcatatttttgtttatcataacttcctgtcacttcaatttccttttactagGTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAA
tcataac putative branch site (score: 361)
cttcaatttcctttt putative PPT
atatttttgtttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaattgtcaatttctctctatacttttctacagaaacttttctgattgcatatttttgtttatcataacttcctgtcacttcaatttccttttactagGTGCTAAAAGAGGGTTACTGGTTAGAGGAGGTGATGTTTTAGAGCGTTTGGCTGGAATAGATACTCTTGTGCTTGATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - -acagaaa
- - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt