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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtagaaaaatgtgttttaaattattgtttcattgtcaaatgcaggaaatatatacctaaggtacctatgctaaattgttgttgttgttgtcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG

Basic information

species Zea mays
transcript GRMZM5G850355_T04
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 4
----------------------------------------------------agtagaaaaatgtgtttt-----aaattattgtttca-------------ttgtcaaatgcaggaaatata------tacctaaggtacctatgctaaattgttgttgtt--gttgtcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG
                                                     ||| | | || | ||||     |||||  | ||||              || |||  | |   |   ||       | | | |  ||| |||     ||  ||||| ||   || || |||||||||   ||| ||||| || |||||||| || || ||||||||||| |||||||||||||||||||| ||
gtggttttttacagttcatttgatttatacttcagataactattgtatgttttgtaaagacatatatttttcaataaattgctatttcggatagcatgcaatttttcatgtacgacagtcatgatcttttccatcatttacttatttctcatgattgttcttcctttttctaatgcagGAAACTATCCCTGTTACTCAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGG

upper sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 5
agtagaaaaatgtgttttaaattattgt---ttcattgtcaa--atgcaggaaatatatacctaaggtacctatgctaaattg-ttgttgttgttgtcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG
     |  ||  | |    |||||| |    | | || ||||  ||  |     | |   ||   |  |    |  ||| ||| |||    | |  |  | || ||||    || ||||| || || |||||| |||||||||| ||||| |||||||||||||| || || ||
-----aggaacttctacctaattatggagtgtcctttttcaatcatatacatgcttttgtcccttgcaaaaggtattaacttgattgcaaatatcat-gattgtagGAATCAATCCCTGTCACGCAACTTGTGAGGGAGACTGCAGCTGTTATGCAGGAGTTCACTCAATCTGG

upper sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 6
lower sequence: PP1S61_202V6.1 (Physcomitrella patens), 3'ss of exon 5
-----agtagaaaaatgtgttttaaat-tattgtttcattgtcaaatgcaggaaatatatacctaaggtacctatgctaaattgttgttgttgttgtcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG
      |  ||     ||  | |  || |     | || |  ||  ||     ||    ||| |    ||| ||||      || |    ||||  |  ||||||||| |  || ||  |  | ||  | ||  | ||||| ||||| |||||||||||||||||||| |||||
tttattgcggagtttggtactgtcgatctgacagtccaattgcatgtgtccagaacgagtactttgtttacgtatgtc----tgct-cccttgtaat-gaatgcagGAACCCATTCCATTGTCGCAATTGGTTAGAGAGACAGCTGCAGTGATGCAGGAGTTCACACAATCAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020544|gb|AW065472.1|AW065472
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|5895580|gb|AW036826.1|AW036826
EST:     GTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: GTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60355411|gb|DN222384.1|DN222384
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211062082|gb|FL465318.1|FL465318
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|56382484|gb|CV985153.1|CV985153
EST:     CAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: CAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60341905|gb|DN208878.1|DN208878
EST:     AAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: AAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211535545|gb|FL366410.1|FL366410
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGT
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGT
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|9254141|gb|BE344609.1|BE344609
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|16918711|gb|BM073864.1|BM073864
EST:     AGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTG-GCGAGAGACTGCTGCTGTGATGCAG
genomic: AGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTG
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60354522|gb|DN221495.1|DN221495
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|14243343|gb|BG841010.2|BG841010
EST:     AGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: AGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|60359187|gb|DN226160.1|DN226160
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32868632|gb|CF008314.1|CF008314
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|71331106|gb|DR802380.1|DR802380
EST:     AAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: AAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32865823|gb|CF005505.1|CF005505
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211370171|gb|FL333604.1|FL333604
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|32912475|gb|CF017287.1|CF017287
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCA
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatatatacctaaggtacctatgctaaattgttgttgttgttgtcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG
                       tgctaaa  putative branch site (score: 2)
                          taaattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtagaaaaatgtgttttaaattattgtttcattgtcaaatgcaggaaatatatacctaaggtacctatgctaaattgttgttgttgttgtcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAGGAGTTCACACAGTCAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- -agaaaaa
- - - - - tgtgttt
- - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - -atgcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt