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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacactgttttggttgatcttgtattcatttttattttctattttggaatcagaatacattacaattgtggtgaagtttaatgtgattgttgaagttatggactttagtgcatcatctcaattgccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG

Basic information

species Zea mays
transcript GRMZM5G850355_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 3
gtactacactgttttggttgatcttgtattcatttttattttctattttggaatcagaatacattacaattgtggtgaagtttaatgtgattgttga--agttatggactttagtgcatcatctcaattgccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG
                                                                                |||||  |  |||||     ||||      | ||            | |  ||        || || ||   |  || |   || | |   ||| |  |||||||||||||||||| ||||| |||||||| |||||||||||||| || || |||||||||||||||||||||||||||
--------------------------------------------------------------------------------tttaaattatttgttagtttgttacatctctcagcttgctgctgttaatatcagttgcaattcaataatacat-gtttacttacctgt---gcacttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355411|gb|DN222384.1|DN222384
EST:     CTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: CTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATAGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTATGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211362042|gb|FL326986.1|FL326986
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|6020544|gb|AW065472.1|AW065472
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211218837|gb|FL350383.1|FL350383
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     G-GCAAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTTTATAG                         TGGGATGGGTCCAGATTTTCGTGTTTTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGC-AAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211411607|gb|FL320443.1|FL320443
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211372616|gb|FL325639.1|FL325639
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     GTGCAAAATATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|71331110|gb|DR802381.1|DR802381
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGT-GAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|28931244|gb|CB334605.1|CB334605
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211028588|gb|FL333340.1|FL333340
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211040642|gb|FL333768.1|FL333768
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|31910204|gb|CD651307.1|CD651307
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5456381|gb|AI834071.1|AI834071
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGCAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211227292|gb|FL365228.1|FL365228
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211401638|gb|FL329192.1|FL329192
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 795

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 725

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 613

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 520

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG
                                             ttgttttc  CT-rich tract
              tatcatgttttatt  TA-rich tract