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...gattcacagataatcgaaactggaaaatcaaagttttgcactgtttctgcattttgttgcttgcaatgttctatgctgatatttgatcttgaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG
species | Zea mays |
transcript | GRMZM5G846339_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGEST: gi|148945518|gb|EC890763.2|EC890763
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGEST: gi|149004827|gb|EE039332.2|EE039332
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGEST: gi|76915578|gb|DV166043.1|DV166043
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGEST: gi|149112888|gb|EE295684.2|EE295684
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGEST: gi|44682283|gb|CK787331.1|CK787331
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGEST: gi|149070557|gb|EE158959.2|EE158959
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGEST: gi|148950258|gb|EC895810.2|EC895810
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGEST: gi|148965790|gb|EE016673.2|EE016673
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
EST: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAG GACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
genomic: TATCAGAGTCTGACTTCCATTTGCGCAGGTTATGGGGAGACCCAAGTGAGgtatattttc ... gaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAG
tctgcattttgttgcttgcaatgttctatgctgatatttgatcttgaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG
atatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattcacagataatcgaaactggaaaatcaaagttttgcactgtttctgcattttgttgcttgcaatgttctatgctgatatttgatcttgaatatacagGACCTGCCTTTCAAACCAAAGTACCTTGTTACCTTTACTGTTGGAGTTGAGCAGAAAGCAAATATAAACAGAGCTGTGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
gattcac
- - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat