1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taatgatgtaatatttttataatacattttgcatgtgatgcctgtcttttgttgcgattatctcagttttgaaacagcagcattttacatatttatccagGTTGCGTCTTTGAAAGACACAATTTCACGCAAAGATATGGAAATAGAGCAGCTCCAAGTCATCAAAGACAAAGCAAAATCCCCAAATTTATTGTTAGATA
species | Zea mays |
transcript | GRMZM5G845682_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAGAAGCAACAAGGAGGGAAAGGATATAAAAGAGCTACTGGAACAG GTTGCGTCTTTGAAAGACACAATTTCACGCAAAGATATGGAAATAGAGCAGEST: gi|211520868|gb|FL034525.1|FL034525
genomic: GCAAGAAGCAACAAGGAGGGAAAGGATATAAAAGAGCTACTGGAACAGgttcttgtac ... atttatccagGTTGCGTCTTTGAAAGACACAATTTCACGCAAAGATATGGAAATAGAGCAG
EST: CTGCAAGAAGCAACAAGGAGGGAAAGGATATAAAAGAGCTACTGGAACAG GTTGCGTCTTTGAAAGACACAATTTCACGCAAAGATATGGAAATAGAGCAG
genomic: CTGCAAGAAGCAACAAGGAGGGAAAGGATATAAAAGAGCTACTGGAACAGgttcttgtac ... atttatccagGTTGCGTCTTTGAAAGACACAATTTCACGCAAAGATATGGAAATAGAGCAG
cttttgttgcgattatctcagttttgaaacagcagcattttacatatttatccagGTTGCGTCTTTGAAAGACACAATTTCACGCAAAGATATGGAAATAGAGCAGCTCCAAGTCATCAAAGACAAAGCAAAATCCCCAAATTTATTGTTAGATA
tttatcc CT-rich tract
attttacatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgatgtaatatttttataatacattttgcatgtgatgcctgtcttttgttgcgattatctcagttttgaaacagcagcattttacatatttatccagGTTGCGTCTTTGAAAGACACAATTTCACGCAAAGATATGGAAATAGAGCAGCTCCAAGTCATCAAAGACAAAGCAAAATCCCCAAATTTATTGTTAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -tgatgta
- - - - - - - - - - - tacattt
- - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcagc