1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctaggttttttgtttatgttgcaacggtggattagagcctatgtggaccatttttttttttcaattttacaaaggtgtgacatactcgaactggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGCTGTTGCCTGAACCGTGGACGCCGGAGTCCGGGCTGGTGACCGCAGCGC
species | Zea mays |
transcript | GRMZM5G840955_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|67018930|gb|CO447679.1|CO447679
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAAAGAGGGTCAGCAATCGCTATCAAAA GCCGCAAAAGCAGCEST: gi|22715395|gb|BU197739.1|BU197739
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGC
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|38229819|gb|CF920132.1|CF920132
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|211393320|gb|FL420243.1|FL420243
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|60358827|gb|DN225800.1|DN225800
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGEST: gi|87156299|gb|DY401088.1|DY401088
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|26559525|gb|CA831760.1|CA831760
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTEST: gi|211176149|gb|FL381702.1|FL381702
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGT
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAARATCGTGEST: gi|71764388|gb|DR962325.1|DR962325
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|40335028|gb|CK369098.1|CK369098
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAATGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|21809634|gb|BQ667952.1|BQ667952
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGEST: gi|211524614|gb|FL412500.1|FL412500
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|211108566|gb|FL429108.1|FL429108
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGEST: gi|56382586|gb|CV985255.1|CV985255
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
EST: TTTGCCNAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAG GCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAAATCGTG
genomic: TTTGCCAAAACGACCGAGCAATTAAGGAGGTTCAGCAATCGCTATCAAAGgttagacata ... actggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTG
ggaccatttttttttttcaattttacaaaggtgtgacatactcgaactggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGCTGTTGCCTGAACCGTGGACGCCGGAGTCCGGGCTGGTGACCGCAGCGC
atttttttttttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctaggttttttgtttatgttgcaacggtggattagagcctatgtggaccatttttttttttcaattttacaaaggtgtgacatactcgaactggtgcagGCCGCAAAAGCAGCGAGGCTCGAGAAATTCGAGGTGCCAGCGAAGATCGTGCTGTTGCCTGAACCGTGGACGCCGGAGTCCGGGCTGGTGACCGCAGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - ttttgtt
- - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catactc