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...acggcttgacacgcctaagcgctaggcagacggtcagccaattataactgtacagtgtacctttctgaaatagtaccattggtattttcctgaattctagGTTATCTATGATTTGCTTGAGAGATCCTCTGGACACCTGGAGCTTCGAGAAGATCCTGAGCATGGCATAATAGTTGCTGGATTGAGAAGCATTAAG
species | Zea mays |
transcript | GRMZM5G837018_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTAAGGATACGTTTGAAGTTTCATGTTCATATCTGGAAGTGTACAATGAG GTTATCTATGATTTGCTTGAGAGATCCTCTGGACNCCTGGAGCTTCGAGAAEST: gi|83278868|gb|DV942876.1|DV942876
genomic: GTAAGGATACGTTTGAAGTTTCATGTTCATATCTGGAAGTGTACAATGAGgtattcactc ... tgaattctagGTTATCTATGATTTGCTTGAGAGATCCTCTGGACACCTGGAGCTTCGAGAA
EST: GTAAGGATACGTTTGAAGTTTCATGTTCATATCTGGAAGTGTACAATGAG GTTATCTATGATTTGCTTGAGAGATCCTCTGGACACCTGGAGCTTCGAGAAEST: gi|87152314|gb|DY397103.1|DY397103
genomic: GTAAGGATACGTTTGAAGTTTCATGTTCATATCTGGAAGTGTACAATGAGgtattcactc ... tgaattctagGTTATCTATGATTTGCTTGAGAGATCCTCTGGACACCTGGAGCTTCGAGAA
EST: GTAAGGATACGTTTGAAGTTTCATGTTCATATCTGGAAGTGTACAATGAG GTTATCTATGATTTGCTTGAGAGATCCTCTGGACACCTGGAGCTTCGAGAA
genomic: GTAAGGATACGTTTGAAGTTTCATGTTCATATCTGGAAGTGTACAATGAGgtattcactc ... tgaattctagGTTATCTATGATTTGCTTGAGAGATCCTCTGGACACCTGGAGCTTCGAGAA
aactgtacagtgtacctttctgaaatagtaccattggtattttcctgaattctagGTTATCTATGATTTGCTTGAGAGATCCTCTGGACACCTGGAGCTTCGAGAAGATCCTGAGCATGGCATAATAGTTGCTGGATTGAGAAGCATTAAG
ttataac putative branch site (score: 22)
tattttcct putative PPT
aaatagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggcttgacacgcctaagcgctaggcagacggtcagccaattataactgtacagtgtacctttctgaaatagtaccattggtattttcctgaattctagGTTATCTATGATTTGCTTGAGAGATCCTCTGGACACCTGGAGCTTCGAGAAGATCCTGAGCATGGCATAATAGTTGCTGGATTGAGAAGCATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-cggcttg
- - - - -cacgcct
- - - - - - - - - - - - - - - - -tcagcca
- - - - - - - - - - - - - - - - - - - - - - - -ctgtaca