1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcttaatgcaaaaatgtgtagatctcacgcgtattcgataaaagaggtgtttcctatgtttcttttagttaactttacttaataactcttcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAGCATTCATACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGC
species | Zea mays |
transcript | GRMZM5G836910_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|32802835|gb|CD955071.1|CD955071
genomic: AACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: TAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|5342983|gb|AI795288.1|AI795288
genomic: TAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|71440750|gb|DR821800.1|DR821800
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|13515691|gb|BG517967.1|BG517967
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: GAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|211240361|gb|FL028797.1|FL028797
genomic: GAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGAEST: gi|149107658|gb|EE189537.2|EE189537
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|211235886|gb|FL028771.1|FL028771
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|78104308|gb|DV522726.1|DV522726
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|76289791|gb|DV029359.1|DV029359
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|211140308|gb|FL028753.1|FL028753
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|32788347|gb|CD940583.1|CD940583
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: TAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|148941508|gb|EC886438.2|EC886438
genomic: TAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|211240365|gb|FL028801.1|FL028801
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTEST: gi|78114229|gb|DV532618.1|DV532618
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACT
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|211235884|gb|FL028769.1|FL028769
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|149000841|gb|EE038069.2|EE038069
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|211139377|gb|FL028748.1|FL028748
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCEST: gi|211140317|gb|FL028762.1|FL028762
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGC
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|211238126|gb|FL028786.1|FL028786
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|71767561|gb|DR965498.1|DR965498
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAEST: gi|211139376|gb|FL028747.1|FL028747
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
EST: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTG GTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
genomic: CAGCAGAGCTATTGCTTGGAGCTGATAACCCTGTTATTAATCAAGGACTGgtatgtgcta ... tcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCA
aggtgtttcctatgtttcttttagttaactttacttaataactcttcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAGCATTCATACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGC
taataac putative branch site (score: 349)
ctcttcttttgc CT-rich tract
tttcttttagttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttaatgcaaaaatgtgtagatctcacgcgtattcgataaaagaggtgtttcctatgtttcttttagttaactttacttaataactcttcttttgcagGTTGCTACACTTCAGTCTCTCTCGGGCACTGGATCACTGCGTCTCGCTGCAGCATTCATACAAAGATACTTTCCTGAAGCTAAAGTGCTGATATCGTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -aatgcaa
- - - - - - - - - - - - - - - - - - -gataaaag