1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gcagtcagtggtagaaaatggaagttagggatgaattgttctttctgcactcatgcttttactccatgaatatttaaggtaaatagtttatattctgtagGAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCTGGTGTTGTTTTTTGTACTACATCATCATCTGACACAGAGATATACAAACG
species | Zea mays |
transcript | GRMZM5G836588_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACAGAAGCTAAAAACTACCCTCGTGAACCAGCTGCTCATGTGGCAATAA GAACTGTTAGACEST: gi|76286118|gb|DV025686.1|DV025686
genomic: CACAGAAGCTAAAAACTACCCTCGTGAACCAGCTGCTCATGTGGCAATAAgtaagttctt ... tattctgtagGAACTGTTAGAC
EST: CACAGAAGCTAAAAACTACCCTCGTGAACCAGCTGCTCATGTGGCAATAA GAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCTGGTGTTGEST: gi|93016568|gb|EB642088.1|EB642088
genomic: CACAGAAGCTAAAAACTACCCTCGTGAACCAGCTGCTCATGTGGCAATAAgtaagttctt ... tattctgtagGAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCTGGTGTTG
EST: CACAGAAGCTAAAAACTACCCTCGTGAACCAGCTGCTCATGTGGCAATAA GAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCTGGTGTTGEST: gi|148931777|gb|EC875053.2|EC875053
genomic: CACAGAAGCTAAAAACTACCCTCGTGAACCAGCTGCTCATGTGGCAATAAgtaagttctt ... tattctgtagGAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCTGGTGTTG
EST: CACAGAAGCTAAAAACTACCCTCGTGAACCAGCTGCTCATGTGGCAATAA GAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCT
genomic: CACAGAAGCTAAAAACTACCCTCGTGAACCAGCTGCTCATGTGGCAATAAgtaagttctt ... tattctgtagGAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCT
tgcactcatgcttttactccatgaatatttaaggtaaatagtttatattctgtagGAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCTGGTGTTGTTTTTTGTACTACATCATCATCTGACACAGAGATATACAAACG
atgaatatttaaggta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagtcagtggtagaaaatggaagttagggatgaattgttctttctgcactcatgcttttactccatgaatatttaaggtaaatagtttatattctgtagGAACTGTTAGACGTTTCCTGGAGAAGCAAAAAGACAAAATAGCTGGTGTTGTTTTTTGTACTACATCATCATCTGACACAGAGATATACAAACG
gcagtca
- - - - - gtagaaaa
- - - - - - - - - - - - - - - -tgaattg
- - - - - - - - - - - - - - - - - - - - - -tctgcac