1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttatatcttctcgtagcttcttcgttcagtccttgtcatgcacgtgaagttgctcgggcaacagaatacttactgatcactgccactcatctccctctttgcattgtgacgcgcgcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA
species | Zea mays |
transcript | GRMZM5G836250_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAACEST: gi|78106829|gb|DV525247.1|DV525247
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAG ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAACEST: gi|32920564|gb|CF025376.1|CF025376
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
EST: CGCTCGACCCTTCACTTGGCGAGTTCATACTAACCCATCCAGACATCAAG ATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
genomic: CGCTCGACCCTTCACTTGGGGAGTTCATACTAACCCATCCAGACATCAAGgttatatctt ... gcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatatcttctcgtagcttcttcgttcagtccttgtcatgcacgtgaagttgctcgggcaacagaatacttactgatcactgccactcatctccctctttgcattgtgacgcgcgcgcgcgcagATACCTAAGAAGGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC