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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggaactgaagctgaagtgctgaactaatcctgtattttgtatttgtattttacttggttcaagtcatgcaggtatgtgaatgtatggtttctgaattctaagctttggtggtgaatcttcatctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC

Basic information

species Zea mays
transcript GRMZM5G835213_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 5
gtttggaactgaagctgaagtgctgaactaatcctgtattttgtatttgtattttacttggttcaagtcatgcaggtatgtgaatgtatggtttctgaattctaagctttggtggtgaatcttcatctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC
||| |||||||||    || || | ||    | ||    |||| | || |    |  |  || |      || |   |||||||| |  | | |   ||||   ||||||| || ||  | |||||   |||||| |||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||| |||||| ||||||   | | ||||||
gttgggaactgaaa---aactgttaaat--gttct----tttgcaattat----tgttctgtactgtctgtgta--catgtgaatctgagttattaaaatt--gagctttgctgatgtctgttcattcttgcagGCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 5
gtttggaactgaagctgaagtgctgaactaatcctgtattttgtatttgtattttacttggttcaagtcatgcaggtatgtgaatgtatggtttctgaattctaagctttggtggtgaatcttcatct-----atgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC
                     |   |  || |  | |||||||  |   | |||| ||      || |  | |||  || |   |||    ||||   |||  || |  || |  | || ||||||||     ||||||||||||  |||||||||||||| |||||| |||| || || || ||||||||  ||||||||| ||||||||  ||  |||  || ||
---------------------gtatatatatttgtttattttg-gtacatttttttctgaa---aattggtccagtaatttccctgttccttttc---attacaaac--tgattatcaaacttcatctttggcatgcagGTCATTACAATATTTTTGTTGGTGATCTTAGCCCTGAGGTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTC

upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 3'ss of exon 5
gtttggaactgaagctgaagtgctgaactaatcctgtattttgtatttgtattttacttggttcaagtcatgcaggtatgtgaatgtatggtttctga-attctaagctttggtggtgaatcttcatctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC
||| |   ||| || | || |      |||  | |   |||     || |  |  |      | |    ||| || | || | ||  ||  ||  |||  || ||  |||   || ||          | || |||||| || || ||||||||||| |||||  |||| || || ||||||||||| ||||||||||  || ||||  |   | | ||| ||
gttggtttctgtagtttaatt------ctatgcataagtttcactcttatgctgca---aactgattctatggagttttg-gcattcatcattgttgatgttgtattcttgtatgatg---------ttgtgtagGTCACTTCAACATTTTTGTTGGTGATCTCAGCCCTGAGGTTACTGATGCTACATTGTTTGCATGCTTTTCTGTTTTTCCCAGTTGTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361403|gb|CD445760.1|CD445760
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71328163|gb|DR800724.1|DR800724
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|24934275|gb|CA452493.1|CA452493
EST:     ACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: ACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|76916928|gb|DV166611.1|DV166611
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71449843|gb|DR830893.1|DR830893
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|50328157|gb|CO523283.1|CO523283
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149005281|gb|EE039830.2|EE039830
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71436375|gb|DR817425.1|DR817425
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71764597|gb|DR962534.1|DR962534
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|148944552|gb|EC889676.2|EC889676
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149096874|gb|EE182668.2|EE182668
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|22546594|gb|BU098905.1|BU098905
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71428352|gb|DR809402.1|DR809402
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|148965511|gb|EE016330.2|EE016330
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|93013850|gb|EB639370.1|EB639370
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71760191|gb|DR958128.1|DR958128
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|93012834|gb|EB638354.1|EB638354
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|50322712|gb|CO517838.1|CO517838
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149098619|gb|EE184624.2|EE184624
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|22545671|gb|BU098030.1|BU098030
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|148938880|gb|EC883234.2|EC883234
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|94475248|gb|EB704206.1|EB704206
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71324258|gb|DR798829.1|DR798829
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149111090|gb|EE294586.2|EE294586
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|148972836|gb|EE023824.2|EE023824
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|29544652|gb|CB605032.1|CB605032
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|148961382|gb|EE012120.2|EE012120
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149103764|gb|EE289171.2|EE289171
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149104833|gb|EE290297.2|EE290297
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149095084|gb|EE180690.2|EE180690
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71431558|gb|DR812608.1|DR812608
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149073417|gb|EE161721.2|EE161721
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71317247|gb|DR795307.1|DR795307
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|194717059|gb|FK934212.1|FK934212
EST:     GTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71773943|gb|DR971831.1|DR971831
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|5268356|gb|AI770320.1|AI770320
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149079527|gb|EE168509.2|EE168509
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71756632|gb|DR954569.1|DR954569
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149004891|gb|EE039402.2|EE039402
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|149084914|gb|EE174423.2|EE174423
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|32866442|gb|CF006124.1|CF006124
EST:     CTCCGAGGGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: CTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
EST: gi|71431559|gb|DR812609.1|DR812609
EST:     GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGAGAGGACACATCAG                         GTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA
genomic: GATTAAAGTCAATTGGGCATATACAAGTACTCCGAGGGAGGACACATCAGgtttggaact ... atctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaatgtatggtttctgaattctaagctttggtggtgaatcttcatctatgcagGTCATTTTAATATTTTTGTTGGGGATCTTTGCCCGGAAGTCACTGATGCTACTTTGTTTGCATTTTTCTCTGGATACTCTACTTGCTC
                                        tcttcatct  CT-rich tract
                  aattctaa  TA-rich tract