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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattttgttgttagcttacaatagaaagtagctgtttttggttcttgcagtgtttattatgatatatagctgaagctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT

Basic information

species Zea mays
transcript GRMZM5G834205_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149079652|gb|EE168649.2|EE168649
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|93015304|gb|EB640824.1|EB640824
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|93015622|gb|EB641142.1|EB641142
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149083864|gb|EE173239.2|EE173239
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|71428013|gb|DR809063.1|DR809063
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|9953455|gb|BE640038.1|BE640038
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|74245588|gb|DT653502.1|DT653502
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTAGTGCA-TTTTCAAATCGTGCGAA-TGTTCTTGTCACACGAG
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGT-GTGCAATTTTCAAATCG-GCCAAATGTTCTTGTCACACGAG
EST: gi|78107222|gb|DV525640.1|DV525640
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|71421501|gb|DR805467.1|DR805467
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|211276223|gb|FL230638.1|FL230638
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149079653|gb|EE168650.2|EE168650
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149088094|gb|EE177262.2|EE177262
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|93015305|gb|EB640825.1|EB640825
EST:     GAGCTAAAGCAAGGTTCCCTCAATACTATGAGGCATACTATGAGTTGGCG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTC
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTC
EST: gi|149102741|gb|EE288090.2|EE288090
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|71320275|gb|DR796886.1|DR796886
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|76291818|gb|DV031386.1|DV031386
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|78116688|gb|DV535075.1|DV535075
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|76281750|gb|DV021318.1|DV021318
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|76282167|gb|DV021735.1|DV021735
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|76924364|gb|DV169917.1|DV169917
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|148952812|gb|EC898804.2|EC898804
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|32837204|gb|CD976882.1|CD976882
EST:     ACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: ACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|76021099|gb|DT948269.1|DT948269
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|71326004|gb|DR799684.1|DR799684
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149105966|gb|EE291599.2|EE291599
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|76924362|gb|DV169916.1|DV169916
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|89249854|gb|DY621640.1|DY621640
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|148938286|gb|EC882590.2|EC882590
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|71428014|gb|DR809064.1|DR809064
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149102742|gb|EE288091.2|EE288091
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149085134|gb|EE174639.2|EE174639
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|76927739|gb|DV171347.1|DV171347
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149088092|gb|EE287276.2|EE287276
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|71326005|gb|DR799685.1|DR799685
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149059924|gb|EE157051.2|EE157051
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|74245587|gb|DT653501.1|DT653501
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|78091790|gb|DV520164.1|DV520164
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149085242|gb|EE174748.2|EE174748
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|50339159|gb|CO534285.1|CO534285
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|76281749|gb|DV021317.1|DV021317
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|71421504|gb|DR805468.1|DR805468
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149105965|gb|EE291598.2|EE291598
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|149095623|gb|EE174749.2|EE174749
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|101391434|gb|EB817652.1|EB817652
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: gi|93017402|gb|EB642922.1|EB642922
EST:     GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG                         TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 329

TCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 251

TCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 305

TCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 213

TCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcagtgtttattatgatatatagctgaagctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT
                                     tttatcttgcctcc  CT-rich tract
      tgtttattatgatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattttgttgttagcttacaatagaaagtagctgtttttggttcttgcagtgtttattatgatatatagctgaagctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - tgttgtt
- - - - - - - - - - aatagaaa
- - - - - - - - - - - - - - gtagctg
- - - - - - - - - - - - - - - - - - - - - ttcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaag