1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgtcactgccaccaccaccgagcacacaatcaacattcaacactggctgattaaccctgctacgaacagGTGCTCTTCCTGACCAACGGAGGGACGCAGGTGTACGCCGACCCGCGTCGGAACTCGCTGGAGGAGGCCGTCAAGCTGTGCGTCGCCGGCGGGCTGCAGG
species | Zea mays |
transcript | GRMZM5G829946_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCAACCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCT GTGCTCTTCCTGACCAACGGAGGGACGCAEST: gi|148967494|gb|EE018731.2|EE018731
genomic: TCCAACCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCTgtaagtgtca ... ctacgaacagGTGCTCTTCCTGACCAACGGAGGGACGCA
EST: CCCA-CCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCT GTGCTCTTTCTGACCAACGGAEST: gi|211430752|gb|FL131181.1|FL131181
genomic: TCCAACCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCTgtaagtgtca ... ctacgaacagGTGCTCTTCCTGACCAACGGA
EST: TCCAACCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCT GTGCTCTTCCTGAC-AACGGAGGGACGC
genomic: TCCAACCCGATGCCGCGCAGCTCATCCGCAAGCTGCAAGACAAATACCCTgtaagtgtca ... ctacgaacagGTGCTCTTCCTGACCAACGGAGGGACGC
ccaccgagcacacaatcaacattcaacactggctgattaaccctgctacgaacagGTGCTCTTCCTGACCAACGGAGGGACGCAGGTGTACGCCGACCCGCGTCGGAACTCGCTGGAGGAGGCCGTCAAGCTGTGCGTCGCCGGCGGGCTGCAGG
gattaac putative branch site (score: 4)
ccctgct CT-rich tract
tgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtcactgccaccaccaccgagcacacaatcaacattcaacactggctgattaaccctgctacgaacagGTGCTCTTCCTGACCAACGGAGGGACGCAGGTGTACGCCGACCCGCGTCGGAACTCGCTGGAGGAGGCCGTCAAGCTGTGCGTCGCCGGCGGGCTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG