1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatcctgcttgctttctgatctgtatgtatgtagcccttgctgtttcctcgaagttggcttgtttcctcgaagttggcttcagtagagccattctgactaatggaacggtgttcactgtacataccagacTAAAAGGGACGACGCAAGCACTATCATACAAAGAGAGGAGTGGGCCAAGTCGAGACAAGACGTGGAGAAGCATTTCAGGAAGCTCAGAGACTTTGACTAC
species | Zea mays |
transcript | GRMZM5G829928_T01 |
intron # | 5 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG AEST: gi|60340111|gb|DN207084.1|DN207084
genomic: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAGgtatcctgct ... cataccagac-
EST: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG AEST: gi|60340111|gb|DN207084.1|DN207084
genomic: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAGgtatcctgct ... cataccagac-
EST: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG A
genomic: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAGgtatcctgct ... cataccagac-
ggcttcagtagagccattctgactaatggaacggtgttcactgtacataccagacTAAAAGGGACGACGCAAGCACTATCATACAAAGAGAGGAGTGGGCCAAGTCGAGACAAGACGTGGAGAAGCATTTCAGGAAGCTCAGAGACTTTGACTAC
tcactgtac putative branch site
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctgcttgctttctgatctgtatgtatgtagcccttgctgtttcctcgaagttggcttgtttcctcgaagttggcttcagtagagccattctgactaatggaacggtgttcactgtacataccagacTAAAAGGGACGACGCAAGCACTATCATACAAAGAGAGGAGTGGGCCAAGTCGAGACAAGACGTGGAGAAGCATTTCAGGAAGCTCAGAGACTTTGACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
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