1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaatgatgttttttactttgttatgctggtgctgcagcaatgagctcagtttgcttacattcattagttttctttctttacatccattattgccttgcagGCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAGCACGTTCCTCATGGTTACCGTAGGAAATCACTTTTTGAAGGTCTAATTCGATATAATG
species | Zea mays |
transcript | GRMZM5G828278_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCCAGAGCAAAGACCATGTAATGAGGACGCCCGCAGAAAATGGATTGAG GCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAGCACGTTCCTEST: gi|19351133|gb|BM895665.1|BM895665
genomic: ACCCAGAGCAAAGACCATGTAATGAGGACGCCCGCAGAAAATGGATTGAGgtcgagcaga ... tgccttgcagGCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAGCACGTTCCT
EST: ACCCAGAGCAAAGACCATGTAATGAGGACGCCCGCAGAAAATGGATTGAG GCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAGCACGTTCCTEST: gi|22491470|gb|BU051393.1|BU051393
genomic: ACCCAGAGCAAAGACCATGTAATGAGGACGCCCGCAGAAAATGGATTGAGgtcgagcaga ... tgccttgcagGCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAGCACGTTCCT
EST: ACCCAGAGCAAAGACCATGTAATGAGGACGCCCGCAGAAAATGGATTGAG GCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAG
genomic: ACCCAGAGCAAAGACCATGTAATGAGGACGCCCGCAGAAAATGGATTGAGgtcgagcaga ... tgccttgcagGCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAG
tcagtttgcttacattcattagttttctttctttacatccattattgccttgcagGCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAGCACGTTCCTCATGGTTACCGTAGGAAATCACTTTTTGAAGGTCTAATTCGATATAATG
tgcttac putative branch site (score: 171)
ttgcctt putative PPT
attagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgatgttttttactttgttatgctggtgctgcagcaatgagctcagtttgcttacattcattagttttctttctttacatccattattgccttgcagGCCCTTGCTCAGCCAAACAAGCGACTGCGTTCATTGTCTGAGCACGTTCCTCATGGTTACCGTAGGAAATCACTTTTTGAAGGTCTAATTCGATATAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- -tgatgtt
- - - - - - - - - - - - gctggtg
- - - - - - - - - - - - - - - -ctgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac