1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgccattttcggctcctttttccgtgttctttgatgcagtgtgtgtcgtcagtcacaagcaggcaggctaatctggtcatggcgcacaaaacaatttcagGTTCCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAA
species | Zea mays |
transcript | GRMZM5G826838_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACTACCTCGGCGCCGACCAGCCCACCTTCACCCTCAACTTCTCCAAAG GTTCCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGEST: gi|67023766|gb|CO452515.1|CO452515
genomic: CAACTACCTCGGCGCCGACCAGCCCACCTTCACCCTCAACTTCTCCAAAGgtgccatttt ... acaatttcagGTTCCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTG
EST: CAACTACCTCGGNGCCGACCAGCCCAACTTTACCCTCAACTTTTCCAAAG GTTC-AGCCANGTTATTGCACAGTACTACCAGCTGAEST: gi|40335582|gb|CK369652.1|CK369652
genomic: CAACTACCTCGGCGCCGACCAGCCCACCTTCACCCTCAACTTCTCCAAAGgtgccatttt ... acaatttcagGTTCCAGCCAGGTTATTGCACAGTACTACCAGCTGA
EST: CAACTACCTCGGCGCCGACCAGCCCACCTTCACCCTCAACTTCTCCAAAG GTTCCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTG
genomic: CAACTACCTCGGCGCCGACCAGCCCACCTTCACCCTCAACTTCTCCAAAGgtgccatttt ... acaatttcagGTTCCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTG
tcgtcagtcacaagcaggcaggctaatctggtcatggcgcacaaaacaatttcagGTTCCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAA
ggctaat putative branch site (score: 120)
aaaacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccattttcggctcctttttccgtgttctttgatgcagtgtgtgtcgtcagtcacaagcaggcaggctaatctggtcatggcgcacaaaacaatttcagGTTCCAGCCAGGTTATTGCACAGTACTACCAGCTGATCCGCCTTGGCTTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT