1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccccttcctagaccccatttttggcactgggtatgccctcttaaagtttcttcctataatgaccttactgacctcactcacttatgcttgtttttcttagGCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACA
species | Zea mays |
transcript | GRMZM5G825090_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGCCATGTATGAATCCGATGACATCATAAAATATTTAGCTGATACATATG GCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACAEST: gi|211011083|gb|FL375748.1|FL375748
genomic: CGCCATGTATGAATCCGATGACATCATAAAATATCTAGCTGATACATATGgtgtgtattc ... tttttcttagGCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACA
EST: CGCCATGTATGAATCCGATGACATCATAAAATATCTAGCTGATACATATG GCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACA
genomic: CGCCATGTATGAATCCGATGACATCATAAAATATCTAGCTGATACATATGgtgtgtattc ... tttttcttagGCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACA
gtttcttcctataatgaccttactgacctcactcacttatgcttgtttttcttagGCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACA
tgcttgtttttctt CT-rich tract
tttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccttcctagaccccatttttggcactgggtatgccctcttaaagtttcttcctataatgaccttactgacctcactcacttatgcttgtttttcttagGCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA