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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcactatcttttttgatcttgtattcatttaaattttctattttggaattggaatacattacaattgtgttgaagttcaatgttggttgttgttgaagttatggacctttagtgcatcttctcaattgtcaagttttttctatcacgttctattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG

Basic information

species Zea mays
transcript GRMZM5G824831_T04
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824831_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 3
gtactgcactatcttttttgatcttgtattcatttaaattttctattttggaattggaatacattacaattgtgttgaagttcaatgttggttgttgttgaagttatggacctttagtgcatcttctcaattgtcaagttttttctatcacgttctattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG
                                                                          || || ||   |||| |||  ||||  |  | |   | |   |    |  | ||| |||  |    ||   ||  || |    || |   || | |   ||| |  |||||||||||||||||| |||||||||||||| ||||| |||||||| || || ||||| || ||||||||||||||||||
--------------------------------------------------------------------------tttaaattatttgttagtt--tgttacatctctcagcttgctgctgttaatatcagttgcaa----ttcaataatacat---gtttacttacctgt---gcacttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211156519|gb|FL164233.1|FL164233
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252210|gb|FK953391.1|FK953391
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211264914|gb|FL208730.1|FL208730
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252211|gb|FK953392.1|FK953392
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTSGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGT
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGT
EST: gi|211158115|gb|FL164244.1|FL164244
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|148987620|gb|EE031494.2|EE031494
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252215|gb|FK953396.1|FK953396
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|33094853|gb|CF054847.1|CF054847
EST:     GTGCAAAAGATTCAGGCGCTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|6952542|gb|AW424610.1|AW424610
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211153314|gb|FL164202.1|FL164202
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211154915|gb|FL164213.1|FL164213
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|74241051|gb|DT648965.1|DT648965
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211264909|gb|FL208725.1|FL208725
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252214|gb|FK953395.1|FK953395
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211154922|gb|FL164220.1|FL164220
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|149076954|gb|EE165611.2|EE165611
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|32926059|gb|CF030871.1|CF030871
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211149323|gb|FL312581.1|FL312581
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|91875485|gb|EB405442.1|EB405442
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGAGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|71447361|gb|DR828411.1|DR828411
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211153313|gb|FL164201.1|FL164201
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|78112697|gb|DV531091.1|DV531091
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|148952476|gb|EC898302.2|EC898302
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGACGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252219|gb|FK953400.1|FK953400
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|6194486|gb|AW146590.1|AW146590
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211156522|gb|FL164236.1|FL164236
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGTAAAAG
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAG
EST: gi|148956338|gb|EC902144.2|EC902144
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|71445140|gb|DR826190.1|DR826190
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211156514|gb|FL164228.1|FL164228
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|33098530|gb|CF058490.1|CF058490
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211153309|gb|FL164197.1|FL164197
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|67024880|gb|CO453629.1|CO453629
EST:     CTAATATTGTACTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: CTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252217|gb|FK953398.1|FK953398
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|148931204|gb|EC873960.2|EC873960
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252212|gb|FK953393.1|FK953393
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|32795340|gb|CD947576.1|CD947576
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211321302|gb|FL273340.1|FL273340
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcaagttttttctatcacgttctattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCACAACAATATTATCGGTTGTACAAG
                                             ttgttttc  CT-rich tract
       ttttttctat  TA-rich tract