Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacgtgccatctttctttttggccttaataacttgatgctaatgtgtctgggtgagggcccagctcctctggttttgacaacttatttcccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGTCAATGACACTCTTGGATGTAACCTGTCCAACCACACCTCAGTGGGCATT

Basic information

species Zea mays
transcript GRMZM5G823855_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32845909|gb|CD985590.1|CD985590
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTTTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|33091105|gb|CF051099.1|CF051099
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|29947372|gb|CB816622.1|CB816622
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTT
EST: gi|5901422|gb|AW042522.1|AW042522
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|148949248|gb|EC894691.2|EC894691
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|24766527|gb|CA401677.1|CA401677
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|88755879|gb|DY540020.1|DY540020
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTTTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|32935477|gb|CF040289.1|CF040289
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|211248660|gb|FL454469.1|FL454469
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|60339553|gb|DN206526.1|DN206526
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|71321743|gb|DR797565.1|DR797565
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5650156|gb|AI920516.1|AI920516
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5922156|gb|AW055426.1|AW055426
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5650362|gb|AI920722.1|AI920722
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|211298031|gb|FL348697.1|FL348697
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|211480575|gb|FL334477.1|FL334477
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|113702722|gb|EE680226.1|EE680226
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|60351335|gb|DN218308.1|DN218308
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5770169|gb|AI973343.1|AI973343
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5566891|gb|AI881802.1|AI881802
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|211460116|gb|FL447906.1|FL447906
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5922116|gb|AW055510.1|AW055510
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5917368|gb|AW054159.1|AW054159
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCCCAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5915231|gb|AW052872.1|AW052872
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCCCAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|6742560|gb|AW313375.1|AW313375
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCNCAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|211198534|gb|FL470725.1|FL470725
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|149108522|gb|EE189694.2|EE189694
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5650324|gb|AI920684.1|AI920684
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|24764891|gb|CA400053.1|CA400053
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5871658|gb|AW018129.1|AW018129
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|60350932|gb|DN217905.1|DN217905
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5804752|gb|AI979722.1|AI979722
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5739619|gb|AI947414.1|AI947414
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5819327|gb|AI987533.1|AI987533
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|5871676|gb|AW018147.1|AW018147
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|32864789|gb|CF004471.1|CF004471
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
EST: gi|60348857|gb|DN215830.1|DN215830
EST:     CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAG                         TGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT
genomic: CAAATTCGTTTCCTCAAACATTAGATTGGCTTCACAGCTATCTTCTTCAGgtacacgtgc ... cccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtctgggtgagggcccagctcctctggttttgacaacttatttcccttggcagTGCATCGAGCGAGGTCTTTTGGCTGCGTGTTTAGAAAGCTGCAATCAAGGTCAATGACACTCTTGGATGTAACCTGTCCAACCACACCTCAGTGGGCATT
                             ttttgac  putative branch site (score: 3)
                                      cttatttccctt  putative PPT
                                    aacttattt  TA-rich tract